BFO-Based Data and Information Ontologies: Difference between revisions

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(Created page with "'''Articles''' :Mary Bone, Mark Blackburn, Benjamin Kruse, John Dzielski, Thomas Hagedorn and Ian Grosse, "[https://www.mdpi.com/2079-8954/6/4/46 Toward an Interoperability a...")
 
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:Hyunmin Cheong, Adrian Butscher, [https://www.tandfonline.com/doi/full/10.1080/09544828.2019.1644301 Physics-based simulation ontology: an ontology to support modelling and reuse of data for physics-based simulation], ''Journal of Engineering Design'', 23 July 2019.
:Hyunmin Cheong, Adrian Butscher, [https://www.tandfonline.com/doi/full/10.1080/09544828.2019.1644301 Physics-based simulation ontology: an ontology to support modelling and reuse of data for physics-based simulation], ''Journal of Engineering Design'', 23 July 2019.
'''Ontologies'''
:[http://obofoundry.org/ontology/iao.html Information Artifact Ontology (IAO)]
:[https://pdfs.semanticscholar.org/f424/b88d92bcc00ade3d61acede2ee8732301350.pdf Ceusters W. An information artifact ontology perspective on data collections and associated representational artifacts. Stud Health Technol Inform. 2012;180:68–72.]
:[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209884/ Barton, Adrien et al. “An ontological analysis of medical Bayesian indicators of performance.” Journal of biomedical semantics vol. 8,1 1. 3 Jan. 2017, doi:10.1186/s13326-016-0099-4]
:[http://obofoundry.org/ontology/cheminf.html Chemical Information Ontology (CHEMINF)]
:[https://www-spiedigitallibrary-org.gate.lib.buffalo.edu/conference-proceedings-of-spie/10635/106350F/A-common-core-based-cyber-ontology-in-support-of-cross/10.1117/12.2307719.full?SSO=1 Common Core Cyber Ontology (C3O)]
:[http://www.ncbi.nlm.nih.gov/pubmed/20543345 Communication Standards Ontology (CSO)]
:[https://bioportal.bioontology.org/ontologies/CDAO Comparative Data Analysis Ontology (CDAO)]
:[http://ceur-ws.org/Vol-833/paper25.pdf Conceptual Model Ontology (CMO)]
:[https://www.researchgate.net/publication/263323866_Clinical_Data_Integration_Model_Core_Interoperability_Ontology_for_Research_Using_Primary_Care_Data Core Data Integration Model (CDIM)]
:[https://doi.org/10.3390/systems6040046 Decision Ontology]
:[https://code.google.com/p/d-acts Document Act Ontology (D-Acts)]
:[http://ncor.buffalo.edu/2013/STIDS/5-Email.pptx Email Ontology]
:[https://lirias.kuleuven.be/bitstream/123456789/273222/1/sokd10.pdf Exposé: an ontology for data mining experiments] (see also :[https://www.researchgate.net/publication/228525536_Expose_An_ontology_for_data_mining_experiments here])
:[https://arxiv.org/ftp/arxiv/papers/1805/1805.11050.pdf eXtended Formal Ontology (XFO)]
:[http://jamia.bmj.com/content/20/5/986.full General Information Model (GIM)]
:[https://ieeexplore.ieee.org/abstract/document/8795392 Information Security Domain (ISD) ontology]
:[http://ceur-ws.org/Vol-2285/ICBO_2018_paper_59.pdf Informed Consent Ontology (ICO)]
:[https://onlinelibrary.wiley.com/doi/full/10.1002/lrh2.10054 Knowledge Object Reference Ontology (KORO)]
:[http://obofoundry.org/ontology/mf.html Mental Functioning Ontology (MF)]
:[http://obofoundry.org/ontology/obi.html Ontology for Biomedical Investigations (OBI)]
:[http://ceur-ws.org/Vol-2427/SEPDA_2019_paper_15.pdf Ontology for Documentation of Variable/Data Source Selection (ODVDS)]
:[http://www.ontodm.com/ Ontology of Data Mining (OntoDM)]
:[http://www.ontodt.com/ Ontology of Datatypes (OntoDT)] (see also :[http://www.sciencedirect.com/science/article/pii/S0020025515005800 here])
:[https://bioportal.bioontology.org/ontologies/OOEVV Ontology of Experimental Variables and Values (OOEVV)] (with hooks to OBI) (see also :[https://www.isi.edu/projects/kefed_ooevv/kefed_ooevv_technology here])
:[https://www.researchgate.net/publication/299534658_OntoforInfoScience_a_detailed_methodology_for_construction_of_ontologies_and_its_application_in_the_blood_domain  Ontology for Information Science (OntoforInforScience)]
:[http://www.sciencedirect.com.gate.lib.buffalo.edu/science/article/pii/S1570826815000165 Ontology-Based Data Access (OBDA)]
:[http://www.ncbi.nlm.nih.gov/pubmed/20460173 Ontology-Based eXtensible Data Model (OBX)]
:[http://www.sciencedirect.com/science/article/pii/S0952197615000913 Ontology-Driven Information System (ODIS) / Ontology-Driven Scenario Generator (ODSG)]
:[https://code.google.com/p/proper-name-ontology Proper Name Ontology (PNO)]
:[http://cci.case.edu/cci/images/a/aa/Janus.pdf Provenir ontology for provenance modeling]
:[http://ceur-ws.org/Vol-1747/IT605_ICBO2016.pdf Scientific Evidence and Provenance Information Ontology (SEPIO)]
:[http://code.google.com/p/semanticscience/wiki/SIO Semanticscience Integrated Ontology (SIO)]
:[http://ieeexplore.ieee.org/document/8232468/ Sentinel: Platform for Semantic Enrichment of Social Media Streams]
:[http://link.springer.com/article/10.1007/s10489-016-0834-7 Situation Awareness Ontology (SAO)]
:[https://www.tandfonline.com/doi/abs/10.1080/13658816.2017.1309043?journalCode=tgis20 Sketch Map Ontology]
:[http://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-25 Software Ontology (SWO)]
:[http://obofoundry.org/ontology/stato.html Statistics Ontology (STATO)]
:[https://www.scitepress.org/papers/2017/65827/65827.pdf Survey Ontology]
:[https://unsceb-hlcm.github.io/onto-undo/ United Nations System Document Ontology (ONTO-UNDO)]
:[https://openreview.net/forum?id=SkgyVa-coV VIVO Ontology]

Revision as of 15:48, 5 April 2020

Articles

Mary Bone, Mark Blackburn, Benjamin Kruse, John Dzielski, Thomas Hagedorn and Ian Grosse, "Toward an Interoperability and Integration Framework to Enable Digital Thread", Systems, 2018, 6(4), 46; https://doi.org/10.3390/systems6040046.
Hyunmin Cheong, Adrian Butscher, Physics-based simulation ontology: an ontology to support modelling and reuse of data for physics-based simulation, Journal of Engineering Design, 23 July 2019.

Ontologies


Information Artifact Ontology (IAO)
Ceusters W. An information artifact ontology perspective on data collections and associated representational artifacts. Stud Health Technol Inform. 2012;180:68–72.
Barton, Adrien et al. “An ontological analysis of medical Bayesian indicators of performance.” Journal of biomedical semantics vol. 8,1 1. 3 Jan. 2017, doi:10.1186/s13326-016-0099-4


Chemical Information Ontology (CHEMINF)
Common Core Cyber Ontology (C3O)
Communication Standards Ontology (CSO)
Comparative Data Analysis Ontology (CDAO)
Conceptual Model Ontology (CMO)
Core Data Integration Model (CDIM)
Decision Ontology
Document Act Ontology (D-Acts)
Email Ontology
Exposé: an ontology for data mining experiments (see also :here)
eXtended Formal Ontology (XFO)
General Information Model (GIM)
Information Security Domain (ISD) ontology
Informed Consent Ontology (ICO)
Knowledge Object Reference Ontology (KORO)
Mental Functioning Ontology (MF)
Ontology for Biomedical Investigations (OBI)
Ontology for Documentation of Variable/Data Source Selection (ODVDS)
Ontology of Data Mining (OntoDM)
Ontology of Datatypes (OntoDT) (see also :here)
Ontology of Experimental Variables and Values (OOEVV) (with hooks to OBI) (see also :here)
Ontology for Information Science (OntoforInforScience)
Ontology-Based Data Access (OBDA)
Ontology-Based eXtensible Data Model (OBX)
Ontology-Driven Information System (ODIS) / Ontology-Driven Scenario Generator (ODSG)
Proper Name Ontology (PNO)
Provenir ontology for provenance modeling
Scientific Evidence and Provenance Information Ontology (SEPIO)
Semanticscience Integrated Ontology (SIO)
Sentinel: Platform for Semantic Enrichment of Social Media Streams
Situation Awareness Ontology (SAO)
Sketch Map Ontology
Software Ontology (SWO)
Statistics Ontology (STATO)
Survey Ontology
United Nations System Document Ontology (ONTO-UNDO)
VIVO Ontology