Difference between revisions of "Relation Ontology 2018"

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:15:15 Bjoern Peters: '''RO, RO Core, and RO Extended Core'''
:15:15 Bjoern Peters: '''RO, RO Core, and RO Extended Core'''
::16:00 Dividing into workgroups / sessions on different subtopics
:16:00 Dividing into workgroups / sessions on different subtopics
:18:00 Working dinner
:18:00 Working dinner

Revision as of 07:39, 21 October 2018

Date: October 24-25, 2018

Venue: SpringHill Suites Denver at Anschutz Medical Campus, Aurora, CO



The first Relation Ontology meeting, organized by Mike Bada, Larry Hunter, Chris Mungall and Barry Smith, was held in Denver in 2008. Through a series of preparatory phone calls and then the two day meeting in October, we propose to make progress on these issues. Your participation, including in defining the goals and tasks of the group, would be welcome.

This ten-year anniversary meeting is designed to draw on the lessons learned in the intervening years in order to review progress on the current RO and suggest a plan for the future. The meeting, organized by Larry Hunter, Chris Mungall and Barry Smith, is part of the series of meetings organized by the Protein Ontology Consortium. Groundwork for the meeting will be laid in a series of pre-meetings, both online and in the form of teleconferences.


The goals of this meeting are:

  • 1. To review the current treatment of relations in the OBO Foundry: [1]
  • 2. To establish a strategy to establish the Relation Ontology on a firmer footing, with a core, consisting of the relations used in a wide range of ontologies, and a well-curated collection of modules extending the core, wherever possible using standard ontology engineering techniques so that more complex relations are defined in terms of more primitive relations in the RO Core.
  • 3. To harmonize the many alternative sets of relations used by various OBO ontologies.
  • 4. To provide a set of paradigm RO use cases, for example:
providing a set of relations sufficient for expressing the relations among OBO terms denoted by statements in biomedical journal articles.
providing a set of relations sufficient for capturing the relations between PRO terms and terms in other OBO ontologies.
  • 5. To clarify the procedures to be used when requesting a new relation to be added to RO, specifically as concerns use of definitions.


Teleconference discussions held in advance of the meeting are documented here [2]. Email forum is here: [3]

Draft Schedule: Wednesday, October 24, 2018

9:00 Cathy Wu: Introduction
9:15 Chris Mungall, David Osumi Sutherland, James Overton: A basic introduction to RO
Underlying principles and organization
OWL axiomatization
Design Patterns
Overview of main areas
How to contribute
10:15 Barry Smith: Strategy for improving RO
10:45 Break
11:00 Alan Ruttenberg: OWL, Relations and Time
11:30 Larry Hunter: Relation Ontology 2018: Cross-ontology harmonization and new use cases
12:00 Mike Bada: RO and the CRAFT Corpus
12:30 Lunch
13:30 Jim Ballhof: RO and GO
14:00 Cecilia Arighi: PRO/NLP and need for relations
14:30 Darren Natale: Relations in PRO
15:00 Break
15:15 Bjoern Peters: RO, RO Core, and RO Extended Core
16:00 Dividing into workgroups / sessions on different subtopics
18:00 Working dinner

Draft Schedule: Thursday, October 25, 2018

Thursday topics will be scheduled in the course of Wednesday discussions

9:00 TBD
10:30 Break
10:45 TBD
12:15 Lunch
13:00 TBD
16:00 Close

Participants will include:

Cecilia Arighi (Delaware / PRO)
Mike Bada (Denver)
William Baumgartner (Denver)
Judith Blake (JAX)
Mayla Boguslav (Denver)
Jonathan Bona (Arkansas)
Matt Brush (Oregon)
Peter d'Eustachio (NYU)
Alexander Diehl (Buffalo)
Robert Hoehndorf (KAUST)
William Hogan (Florida)
Larry Hunter (Denver)
Suzanna Lewis (LBNL)
Nicolas Matentzoglu (EBI)
Chris Mungall (LBNL)
Darren Natale (Georgetown)
David Osumi-Sutherland (EBI / Cambridge)
Alan Ruttenberg (Buffalo)
Michael Sinclair (Utah)
Barry Smith (Buffalo)
Christian Stoeckert (Penn)
Anne Thessen (Oregon)
Cathy Wu (Delaware / PRO)

Please contact Barry Smith for further information.


The Protein Ontology Consortium
University of Colorado Knowledge-Based Biomedical Data Science Program
National Center for Ontological Research