2013 ICBO OBO tutorial - Revision history

Mcourtot: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-08T13:35:59Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 13:35, 8 July 2013
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	This tutorial is collocated with the [http://www.unbsj.ca/sase/csas/data/ws/icbo2013/ ICBO conference] taking place in Montreal, Canada. It is '''FREE'''! <!--Registration details are provided [http://www.unbsj.ca/sase/csas/data/ws/semantic-trilogy-2013/registration.html here].-->		This tutorial is collocated with the [http://www.unbsj.ca/sase/csas/data/ws/icbo2013/ ICBO conference] taking place in Montreal, Canada. It is '''FREE'''! <!--Registration details are provided [http://www.unbsj.ca/sase/csas/data/ws/semantic-trilogy-2013/registration.html here].-->
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			[http://storify.com/kerfors/icbo2013 Links and Tweets] from Kerstin Forsberg (@kerfors)

	'''Schedule'''		'''Schedule'''

Phismith: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-07T15:19:10Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 15:19, 7 July 2013
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	:10.15 to 10.45 - coffee break		:10.15 to 10.45 - coffee break

	:10:45 to 11:30 - OBO Foundry, OWL, and the Semantic Web (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg)		:10:45 to 11:45 - OBO Foundry, OWL, and the Semantic Web (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg)

	~~:11.30 to 11.45 - OBO, obo2owl, OORT (Melissa Haendel~~)

	:11.45 to 12.00 - Discussion - help Protege installation available		:11.45 to 12.00 - Discussion - help Protege installation available
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	:15:30 to 16:00 - Ontology quality checking and usage (James Overton)		:15:30 to 16:00 - Ontology quality checking and usage (James Overton)
	::Including ontology consistency checking, reasoning, and querying (DL and SPARQL queries)		::Including ontology consistency checking, reasoning, and querying (DL and SPARQL queries), obo2owl, OORT

	:16:00 to 16:30 - Reuse existing terms defined in external resources: MIREOT and OntoFox (Jie Zheng)		:16:00 to 16:30 - Reuse existing terms defined in external resources: MIREOT and OntoFox (Jie Zheng)

Phismith: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-07T11:05:10Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 11:05, 7 July 2013
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	:University at Buffalo Department of Philosophy		:University at Buffalo Department of Philosophy
	:email:phismith@buffalo.edu		:email:phismith@buffalo.edu
	Barry Smith is Professor of Philosophy, Neurology and Computer Science and Director of the National Center for Ontological Research at the University at Buffalo. He is also one of the principal scientists of the National Center for Biomedical Ontology (NCBO), an NIH Roadmap National Center for Biomedical Computing, a member ~~oft he~~ Scientific Advisory Board of the Gene Ontology Consortium, and a PI of the Protein Ontology and Infectious Disease Ontology projects. He is a Coordinating Editor of the OBO Foundry initiative, and plays a guiding role in Basic Formal Ontology and the Ontology for General Medical Science, the Environment Ontology, and the Plant Ontology initiatives.		[http://ontology.buffalo.edu/smith Barry Smith] is Professor of Philosophy, Neurology and Computer Science and Director of the National Center for Ontological Research at the University at Buffalo. He is also one of the principal scientists of the National Center for Biomedical Ontology (NCBO), an NIH Roadmap National Center for Biomedical Computing, a member of the Scientific Advisory Board of the Gene Ontology Consortium, and a PI of the Protein Ontology and Infectious Disease Ontology projects. He is a Coordinating Editor of the OBO Foundry initiative, and plays a guiding role in Basic Formal Ontology and the Ontology for General Medical Science, the Environment Ontology, and the Plant Ontology initiatives.

	'''Carlo Torniai'''		'''Carlo Torniai'''

Mcourtot: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-06T18:42:45Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 18:42, 6 July 2013
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	:10.15 to 10.45 - coffee break		:10.15 to 10.45 - coffee break

	:10:45 to 11:30 - OWL ~~format~~ (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg)		:10:45 to 11:30 - OBO Foundry, OWL, and the Semantic Web (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg)
	~~::Including Semanticweb~~

	:11.30 to 11.45 - OBO, obo2owl, OORT (Melissa Haendel)		:11.30 to 11.45 - OBO, obo2owl, OORT (Melissa Haendel)

Mcourtot: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-04T17:06:49Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 17:06, 4 July 2013
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	::Including Semanticweb		::Including Semanticweb

	:Discussion ~~30 min~~ - help Protege installation available		:11.30 to 11.45 - OBO, obo2owl, OORT (Melissa Haendel)

			:11.45 to 12.00 - Discussion - help Protege installation available

Mcourtot: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-04T16:50:47Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 16:50, 4 July 2013
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	:9:45 to 10:30 - OBO Foundry working groups (45 min) 30 min talk, 15 min discussion		:9:45 to 10:30 - OBO Foundry working groups (45 min) 30 min talk, 15 min discussion
	::Editorial group ~~(Melissa Haendel)~~ - 15 min talk (~~Melanie Courtot~~)		::Editorial group - 15 min talk (Melissa Haendel)
	::Technical and Outreach groups - 15 min talk (Melanie Courtot)		::Technical and Outreach groups - 15 min talk (Melanie Courtot)

Mcourtot: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-04T16:49:45Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 16:49, 4 July 2013
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	:9:45 to 10:30 - OBO Foundry working groups (45 min) 30 min talk, 15 min discussion		:9:45 to 10:30 - OBO Foundry working groups (45 min) 30 min talk, 15 min discussion
	::Editorial group (Melissa Haendel)		::Editorial group (Melissa Haendel) - 15 min talk (Melanie Courtot)
	::Technical and Outreach groups - 30 min talk (Melanie Courtot)		::Technical and Outreach groups - 15 min talk (Melanie Courtot)

	:10.15 to 10.45 - coffee break		:10.15 to 10.45 - coffee break

Jie Zheng: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-07-03T20:24:27Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 20:24, 3 July 2013
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	:Obsolete terms (installation can follow instruction of ‘OBO style graph view’ installation)		:Obsolete terms (installation can follow instruction of ‘OBO style graph view’ installation)
	::https://github.com/balhoff/obo-actions/downloads		::https://github.com/balhoff/obo-actions/downloads
	:URIgen - assign URI to terms		<!--:URIgen - assign URI to terms
	::http://code.google.com/p/urigen/wiki/ProtegePlugin		::http://code.google.com/p/urigen/wiki/ProtegePlugin -->
	:ELK (OWL EL reasoner)		:ELK (OWL EL reasoner)
	::http://code.google.com/p/elk-reasoner/downloads/detail?name=elk-distribution-0.3.2-protege-plugin.zip		::http://code.google.com/p/elk-reasoner/downloads/detail?name=elk-distribution-0.3.2-protege-plugin.zip

Jie Zheng: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-06-28T22:46:15Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 22:46, 28 June 2013
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	'''Venue'''		'''Venue'''

	This tutorial is collocated with the [http://www.unbsj.ca/sase/csas/data/ws/icbo2013/ ICBO conference] taking place in Montreal, Canada. Registration details are provided [http://www.unbsj.ca/sase/csas/data/ws/semantic-trilogy-2013/registration.html here].		This tutorial is collocated with the [http://www.unbsj.ca/sase/csas/data/ws/icbo2013/ ICBO conference] taking place in Montreal, Canada. It is '''FREE'''! <!--Registration details are provided [http://www.unbsj.ca/sase/csas/data/ws/semantic-trilogy-2013/registration.html here].-->
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	:Protégé 4.3		:Protégé 4.3
	::http://protege.stanford.edu/download/protege/4.3/installanywhere/Web_Installers/		::http://protege.stanford.edu/download/protege/4.3/installanywhere/Web_Installers/
	~~:Entity URI (shows the URI of the last selected entity)~~
	~~::http://code.google.com/p/co-ode-owl-plugins/wiki/URITools~~
	~~:Obsolete terms~~
	~~::https://github.com/balhoff/obo-actions/downloads~~
	:OBO style graph view		:OBO style graph view
	::http://code.google.com/p/obographview/		::http://code.google.com/p/obographview/
			:Obsolete terms (installation can follow instruction of ‘OBO style graph view’ installation)
			::https://github.com/balhoff/obo-actions/downloads
	:URIgen - assign URI to terms		:URIgen - assign URI to terms
	::http://code.google.com/p/urigen/wiki/ProtegePlugin		::http://code.google.com/p/urigen/wiki/ProtegePlugin
	~~:Pellet (OWL reasoner)~~
	~~::http://clarkparsia.com/pellet/download/~~
	:ELK (OWL EL reasoner)		:ELK (OWL EL reasoner)
	::http://code.google.com/p/elk-reasoner/downloads/~~list~~		::http://code.google.com/p/elk-reasoner/downloads/detail?name=elk-distribution-0.3.2-protege-plugin.zip

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Mcourtot: /* OBO Foundry 101: Collaborative ontology development, tool support and semantic web */

2013-06-27T22:51:50Z

OBO Foundry 101: Collaborative ontology development, tool support and semantic web

← Older revision		Revision as of 22:51, 27 June 2013
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	:9:45 to 10:30 - OBO Foundry working groups (45 min) 30 min talk, 15 min discussion		:9:45 to 10:30 - OBO Foundry working groups (45 min) 30 min talk, 15 min discussion
	::Editorial group, Technical and Outreach groups - 30 min talk (~~Melissa Haendel/~~Melanie Courtot)		::Editorial group (Melissa Haendel)
	~~::Discussion 15 min~~		::Technical and Outreach groups - 30 min talk (Melanie Courtot)

	:10~~:30~~ to ~~11:00~~ - coffee break		:10.15 to 10.45 - coffee break

	:11:00 to 11:45 - OWL format (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg)		:10:45 to 11:30 - OWL format (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg)
	::Including Semanticweb		::Including Semanticweb

	:Discussion 15 min		:Discussion 30 min - help Protege installation available


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	:13:30 to 14:30 - Basic Knowledge of Ontology (focusing on OWL) and Protégé (Alan Ruttenberg/Melanie Courtot)		:13:30 to 14:30 - Basic Knowledge of Ontology (focusing on OWL) and Protégé (Alan Ruttenberg/Melanie Courtot)
	::Including how to use OBO Foundry ontologies and ~~getting start~~ to develop an ontology		::Including how to use OBO Foundry ontologies and starting to develop an ontology

	:14:30 to 15:00 - Protégé plugins and ontology tools (Jie Zheng)		:14:30 to 15:00 - Protégé plugins and ontology tools (Jie Zheng)