CTSOC Kickoff Meeting - Revision history

Phismith: /* Draft Program */

2025-10-20T17:16:38Z

Draft Program

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	Further topic suggestions are welcome.		Further topic suggestions are welcome.

	==~~Draft~~ Program==		==Program==

	'''Morning Session'''		'''Morning Session'''

Phismith: Add links to all presentation videos

2025-10-08T17:45:59Z

Add links to all presentation videos

Phismith: Add links to presentation slides

2025-09-19T15:58:31Z

Add links to presentation slides

Phismith: /* Participants */

2025-09-15T14:50:47Z

Participants

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	Naveed Shah (UB)		Naveed Shah (UB)

			Sonia Sharma (SDM, UB)

	Barry Smith (UB)		Barry Smith (UB)

Phismith: /* Participants */

2025-09-15T14:00:34Z

Participants

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	Alex Bartnik (UB)		Alex Bartnik (UB)

			Sam Border (UB)

	Mathias Brochhausen (UAMS)		Mathias Brochhausen (UAMS)

Phismith: /* Draft Program */

2025-09-12T18:10:03Z

Draft Program

← Older revision		Revision as of 18:10, 12 September 2025
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	:11:30 Elena Milivinti (UB): Integrating Survey Data using ODFA		:11:30 Elena Milivinti (UB): Integrating Survey Data using ODFA
	:11:40 Regina Hurley (UB): The Injury Ontology		:11:40 Regina Hurley (UB): The Injury Ontology
	:11:50 ~~Werner Ceusters (UB): How to use ontologies to improve the usability of data at CTSA hubs~~		:11:50 Barry Smith and William Hogan: Introduction to the Clinical and Translational Science Ontology Consortium
	~~:12:05~~ Barry Smith and William Hogan: Introduction to the Clinical and Translational Science Ontology Consortium

	:12:30 '''Lunch'''		:12:15 '''Lunch'''

	'''Afternoon Session'''		'''Afternoon Session'''

Phismith: /* Participants */

2025-09-12T15:59:07Z

Participants

← Older revision		Revision as of 15:59, 12 September 2025
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	William Hogan (MCW)		William Hogan (MCW)

			Anthony Huffman (UMichigan Ann Arbor)

	Regina Hurley (UB)		Regina Hurley (UB)

Phismith: /* Participants */

2025-08-22T12:19:11Z

Participants

← Older revision		Revision as of 12:19, 22 August 2025
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	Richard Scheuermann (NLM Scientific Director)		Richard Scheuermann (NLM Scientific Director)

	Alec Sculley		Alec Sculley (Summit Knowledge Solutions)

	Naveed Shah (UB)		Naveed Shah (UB)

Phismith: /* Participants */

2025-08-21T19:47:36Z

Participants

← Older revision		Revision as of 19:47, 21 August 2025
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	Bjoern Peters (La Jolla Institute for Immunology)		Bjoern Peters (La Jolla Institute for Immunology)

			Fabrício Henrique Rodrigues (UB)

	Alan Ruttenberg (UB)		Alan Ruttenberg (UB)

Phismith: /* Clinical and Translational Science Ontology Consortium (CTSOC) */

2025-08-20T19:25:53Z

Clinical and Translational Science Ontology Consortium (CTSOC)

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	==Clinical and Translational Science Ontology Consortium (CTSOC)==		==Clinical and Translational Science Ontology Consortium (CTSOC)==

	CTSOC was established in the Spring of ~~2027~~ to advance the goals of the NIH CTSA initiative by promoting ontology-based interoperability of data within and between CTSA hubs. Barry Smith (Buffalo) and William Hogan (MCW) will serve as Co-Directors. Exploring relations between ontology and AI will be a characteristic of the CTSOC meetings down the road.		CTSOC was established in the Spring of 2025 to advance the goals of the NIH CTSA initiative by promoting ontology-based interoperability of data within and between CTSA hubs. Barry Smith (Buffalo) and William Hogan (MCW) will serve as Co-Directors. Exploring relations between ontology and AI will be a characteristic of the CTSOC meetings down the road.

	==CTSOC Kickoff Meeting, September 17 2025, 10am - 4pm (EST)==		==CTSOC Kickoff Meeting, September 17 2025, 10am - 4pm (EST)==

← Older revision		Revision as of 17:45, 8 October 2025
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	'''Morning Session'''		'''Morning Session'''
	:10:00 Introduction		:10:00 Introduction
	:10:05 Alex Diehl (UB): Applied Biomedical Ontology at UB Biomedical Informatics ([https://buffalo.box.com/s/xctppgc53hux11m6kp9we1q4r17n8boi slides])		:10:05 Alex Diehl (UB): Applied Biomedical Ontology at UB Biomedical Informatics ([https://buffalo.box.com/s/xctppgc53hux11m6kp9we1q4r17n8boi slides] [https://youtu.be/pMwegI_JqMQ video])
	:10:20 Alex Bartnik (UB): MRI Acquisition and Analysis Ontology ([https://buffalo.box.com/s/pu00fvhg74emoljg2svtwciabkgsh2pp slides])		:10:20 Alex Bartnik (UB): MRI Acquisition and Analysis Ontology ([https://buffalo.box.com/s/pu00fvhg74emoljg2svtwciabkgsh2pp slides] [https://youtu.be/onWCeRwh-wQ video])
	:10:35 Finn Wilson (UB) and Bill Duncan (Florida): Pain Ontology ([https://buffalo.box.com/s/qwco9qh7vex7vhfb2uhgz4wifldiomrs slides])		:10:35 Finn Wilson (UB) and Bill Duncan (Florida): Pain Ontology ([https://buffalo.box.com/s/qwco9qh7vex7vhfb2uhgz4wifldiomrs slides] [https://youtu.be/TWHVvG92_Es video])
	:10:50 Ava Cunningham (UB): Transforming the International Classification of Pain into an Ontology ([https://buffalo.box.com/s/76pj2332xg62gpomd8siu6bmfduw46ak slides])		:10:50 Ava Cunningham (UB): Transforming the International Classification of Pain into an Ontology ([https://buffalo.box.com/s/76pj2332xg62gpomd8siu6bmfduw46ak slides] [https://youtu.be/S9mxdJL8Iak video])

	:11:00 '''Coffee Break'''		:11:00 '''Coffee Break'''

	:11:15 Bill Duncan: Ontology of Dental-Care Related Fear and Anxiety (ODFA) ([https://buffalo.box.com/s/a6dwtub7ojqqw5luotltfb6ep62rlqqw slides])		:11:15 Bill Duncan: Ontology of Dental-Care Related Fear and Anxiety (ODFA) ([https://buffalo.box.com/s/a6dwtub7ojqqw5luotltfb6ep62rlqqw slides] [https://youtu.be/PCKZD5ViZDg video])
	:11:30 Elena Milivinti (UB): Integrating Survey Data using ODFA ([https://buffalo.box.com/s/vvkdp3uqyunuqfhpnj725wwsiwolidvo slides])		:11:30 Elena Milivinti (UB): Integrating Survey Data using ODFA ([https://buffalo.box.com/s/vvkdp3uqyunuqfhpnj725wwsiwolidvo slides] [https://youtu.be/K7AiXeheGvU video])
	:11:40 Regina Hurley (UB): The Injury Ontology ([https://buffalo.box.com/s/1jhxax02y40lyexznoli5u55to95covg slides])		:11:40 Regina Hurley (UB): The Injury Ontology ([https://buffalo.box.com/s/1jhxax02y40lyexznoli5u55to95covg slides]) ([https://youtu.be/h2Yq2dzdsj8 video])
	:11:50 Barry Smith and William Hogan: Introduction to the Clinical and Translational Science Ontology Consortium ([https://buffalo.box.com/s/yo11jdu5ht7q8s9kedhnc4wjkv93cej2 slides 1] [https://buffalo.box.com/s/ip6l3bl6o6kvjqmkk58slxjflc3g6sjy slides 2])		:11:50 Barry Smith and William Hogan: Introduction to the Clinical and Translational Science Ontology Consortium ([https://buffalo.box.com/s/yo11jdu5ht7q8s9kedhnc4wjkv93cej2 slides 1] [https://youtu.be/TO7t7Jwj-N0 video 1] [https://buffalo.box.com/s/ip6l3bl6o6kvjqmkk58slxjflc3g6sjy slides 2] [https://youtu.be/eF0ublX96Ao video 2])

	:12:15 '''Lunch'''		:12:15 '''Lunch'''

	'''Afternoon Session'''		'''Afternoon Session'''
	:13:30 Bjoern Peters (LJI San Diego): Ontology of Biomedical Investigations (OBI) ([https://buffalo.box.com/s/3tihit9z3honvjk3nyh1s72ppp9i81i8 slides])		:13:30 Bjoern Peters (LJI San Diego): Ontology of Biomedical Investigations (OBI) ([https://buffalo.box.com/s/3tihit9z3honvjk3nyh1s72ppp9i81i8 slides] [https://youtu.be/Rqm1dBlv38s video])
	:13:45 Mathias Brochhausen (UAMS): i. OOSTT: Organisation Ontology, ii. Ontology and AI in UAMS ([https://buffalo.box.com/s/kzflvhm9px841uk9ifawsm7qvibnr2nl slides])		:13:45 Mathias Brochhausen (UAMS): i. OOSTT: Organisation Ontology, ii. Ontology and AI in UAMS ([https://buffalo.box.com/s/kzflvhm9px841uk9ifawsm7qvibnr2nl slides] [https://youtu.be/QU6TnAZsI3w video])
	:14:00 Matt Diller (NLM): OGMS: Ontology for General Medical Science ([https://buffalo.box.com/s/cw5kojid7bf8jxijhtan2v5dxgk66opx slides])		:14:00 Matt Diller (NLM): OGMS: Ontology for General Medical Science ([https://buffalo.box.com/s/cw5kojid7bf8jxijhtan2v5dxgk66opx slides] [https://youtu.be/xbCa9WBKDYc video])
	:14:15 William Hogan (MCW): Ontology of Social Resource Access ([https://buffalo.box.com/s/j54gsvjanzi9n9kh3w6kh7j46w4ubhlw slides])		:14:15 William Hogan (MCW): Ontology of Social Resource Access ([https://buffalo.box.com/s/j54gsvjanzi9n9kh3w6kh7j46w4ubhlw slides] [https://youtu.be/w6rKKwnKuLk video])
	:14:30 Yongqun (Oliver) He (UMich): The Vaccine Ontology (VO) ([https://buffalo.box.com/s/h2hicmvjq287jvxdy9o0kdmm5zy99kkk slides])		:14:30 Yongqun (Oliver) He (UMich): The Vaccine Ontology (VO) ([https://buffalo.box.com/s/h2hicmvjq287jvxdy9o0kdmm5zy99kkk slides] [https://youtu.be/xGEFgPwKWLM video])
	:14:45 Anna Maria Masci (MDAnderson): Ontology-driven proposal for clinical AI Evaluation ([https://buffalo.box.com/s/hn5xgss19976h5u224doyeyyp2tzxi38 slides])		:14:45 Anna Maria Masci (MDAnderson): Ontology-driven proposal for clinical AI Evaluation ([https://buffalo.box.com/s/hn5xgss19976h5u224doyeyyp2tzxi38 slides] [https://youtu.be/EHbYd2_jWZc video])
	:15:00 John Beverley (UB): Steps towards an ontology of uses of AI in medicine ([https://buffalo.box.com/s/wm52ilj2pyco3owog11imx5kwlqmy3tx slides])		:15:00 John Beverley (UB): Steps towards an ontology of uses of AI in medicine ([https://buffalo.box.com/s/wm52ilj2pyco3owog11imx5kwlqmy3tx slides] [https://youtu.be/Kr9WCpQ3llU video])
	:15:15 Naveed Shah (UB): How to gather data regarding AI usage in medicine across the CTSA ecosystem ([https://buffalo.box.com/s/yqvgwvu4c5g7ek9syuiidhebp8nca9k6 slides])		:15:15 Naveed Shah (UB): How to gather data regarding AI usage in medicine across the CTSA ecosystem ([https://buffalo.box.com/s/yqvgwvu4c5g7ek9syuiidhebp8nca9k6 slides] [https://youtu.be/kFYzPmLlDj0 video])
	:15:30 John Beverley (UB): RAG, neurosymbolic and other approaches to the use of ontology in AI ([https://buffalo.box.com/s/wm52ilj2pyco3owog11imx5kwlqmy3tx slides])		:15:30 John Beverley (UB): RAG, neurosymbolic and other approaches to the use of ontology in AI ([https://buffalo.box.com/s/wm52ilj2pyco3owog11imx5kwlqmy3tx slides] [https://youtu.be/MGNOnMcMNow video])

	:16:00 '''Close'''		:16:00 '''Close'''

← Older revision		Revision as of 15:58, 19 September 2025
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	'''Morning Session'''		'''Morning Session'''
	:10:00 Introduction		:10:00 Introduction
	:10:05 Alex Diehl (UB): Applied Biomedical Ontology at UB Biomedical Informatics		:10:05 Alex Diehl (UB): Applied Biomedical Ontology at UB Biomedical Informatics ([https://buffalo.box.com/s/xctppgc53hux11m6kp9we1q4r17n8boi slides])
	:10:20 Alex Bartnik (UB): MRI Acquisition and Analysis Ontology		:10:20 Alex Bartnik (UB): MRI Acquisition and Analysis Ontology ([https://buffalo.box.com/s/pu00fvhg74emoljg2svtwciabkgsh2pp slides])
	:10:35 Finn Wilson (UB) and Bill Duncan (Florida): Pain Ontology		:10:35 Finn Wilson (UB) and Bill Duncan (Florida): Pain Ontology ([https://buffalo.box.com/s/qwco9qh7vex7vhfb2uhgz4wifldiomrs slides])
	:10:50 Ava Cunningham (UB): Transforming the International Classification of Pain into an Ontology		:10:50 Ava Cunningham (UB): Transforming the International Classification of Pain into an Ontology ([https://buffalo.box.com/s/76pj2332xg62gpomd8siu6bmfduw46ak slides])

	:11:00 '''Coffee Break'''		:11:00 '''Coffee Break'''

	:11:15 Bill Duncan: Ontology of Dental-Care Related Fear and Anxiety (ODFA)		:11:15 Bill Duncan: Ontology of Dental-Care Related Fear and Anxiety (ODFA) ([https://buffalo.box.com/s/a6dwtub7ojqqw5luotltfb6ep62rlqqw slides])
	:11:30 Elena Milivinti (UB): Integrating Survey Data using ODFA		:11:30 Elena Milivinti (UB): Integrating Survey Data using ODFA ([https://buffalo.box.com/s/vvkdp3uqyunuqfhpnj725wwsiwolidvo slides])
	:11:40 Regina Hurley (UB): The Injury Ontology		:11:40 Regina Hurley (UB): The Injury Ontology ([https://buffalo.box.com/s/1jhxax02y40lyexznoli5u55to95covg slides])
	:11:50 Barry Smith and William Hogan: Introduction to the Clinical and Translational Science Ontology Consortium		:11:50 Barry Smith and William Hogan: Introduction to the Clinical and Translational Science Ontology Consortium ([https://buffalo.box.com/s/yo11jdu5ht7q8s9kedhnc4wjkv93cej2 slides 1] [https://buffalo.box.com/s/ip6l3bl6o6kvjqmkk58slxjflc3g6sjy slides 2])

	:12:15 '''Lunch'''		:12:15 '''Lunch'''

	'''Afternoon Session'''		'''Afternoon Session'''
	:13:30 Bjoern Peters (LJI San Diego): Ontology of Biomedical Investigations (OBI)		:13:30 Bjoern Peters (LJI San Diego): Ontology of Biomedical Investigations (OBI) ([https://buffalo.box.com/s/3tihit9z3honvjk3nyh1s72ppp9i81i8 slides])
	:13:45 Mathias Brochhausen (UAMS): i. OOSTT: Organisation Ontology, ii. Ontology and AI in UAMS		:13:45 Mathias Brochhausen (UAMS): i. OOSTT: Organisation Ontology, ii. Ontology and AI in UAMS ([https://buffalo.box.com/s/kzflvhm9px841uk9ifawsm7qvibnr2nl slides])
	:14:00 Matt Diller (NLM): OGMS: Ontology for General Medical Science		:14:00 Matt Diller (NLM): OGMS: Ontology for General Medical Science ([https://buffalo.box.com/s/cw5kojid7bf8jxijhtan2v5dxgk66opx slides])
	:14:15 William Hogan (MCW): Ontology of Social Resource Access		:14:15 William Hogan (MCW): Ontology of Social Resource Access ([https://buffalo.box.com/s/j54gsvjanzi9n9kh3w6kh7j46w4ubhlw slides])
	:14:30 Yongqun (Oliver) He (UMich): The Vaccine Ontology (VO)		:14:30 Yongqun (Oliver) He (UMich): The Vaccine Ontology (VO) ([https://buffalo.box.com/s/h2hicmvjq287jvxdy9o0kdmm5zy99kkk slides])
	:14:45 Anna Maria Masci (MDAnderson): Ontology-driven proposal for clinical AI Evaluation		:14:45 Anna Maria Masci (MDAnderson): Ontology-driven proposal for clinical AI Evaluation ([https://buffalo.box.com/s/hn5xgss19976h5u224doyeyyp2tzxi38 slides])
	:15:00 John Beverley (UB): Steps towards an ontology of uses of AI in medicine		:15:00 John Beverley (UB): Steps towards an ontology of uses of AI in medicine ([https://buffalo.box.com/s/wm52ilj2pyco3owog11imx5kwlqmy3tx slides])
	:15:15 Naveed Shah (UB): How to gather data regarding AI usage in medicine across the CTSA ecosystem		:15:15 Naveed Shah (UB): How to gather data regarding AI usage in medicine across the CTSA ecosystem ([https://buffalo.box.com/s/yqvgwvu4c5g7ek9syuiidhebp8nca9k6 slides])
	:15:30 John Beverley (UB): RAG, neurosymbolic and other approaches to the use of ontology in AI		:15:30 John Beverley (UB): RAG, neurosymbolic and other approaches to the use of ontology in AI ([https://buffalo.box.com/s/wm52ilj2pyco3owog11imx5kwlqmy3tx slides])
	:~~15:45 TBD~~

	:16:00 '''Close'''		:16:00 '''Close'''