How to Develop and Use OBO Foundry Ontologies - Revision history

Mcourtot: adding personal details

2012-07-25T16:36:24Z

adding personal details

← Older revision		Revision as of 16:36, 25 July 2012
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	'''Mélanie Courtot'''		'''Mélanie Courtot'''
	C-~~BRASS project manager at The University~~ of ~~British Columbia~~		:BC Cancer Agency
	~~Software engineer~~ - ~~Ontologist at BCCRC~~		:email: mcourtot@gmail.com

			Mélanie Courtot is a PhD student whose research focuses on improving vaccine adverse events reporting in the context of the Public Health Agency of Canada - Canadian Institutes of Health Research Influenza Research Network (PCIRN). She has actively contributed to several biomedical ontologies, including the Ontology for Biomedical Investigations (OBI), the Information Artifact Ontology (IAO), the Vaccine Ontology (VO) and the Influenza Ontology. She co-developed the Minimum Information to Reference an External Ontology Term (MIREOT), increasing their interoperability. She co-founded and organizes the Semantic Web Meetup group in Vancouver, which currently counts more than 140 members. She is an elected steering committee member of the OWL Experiences and Directions (OWLED) workshop series since 2008, and chaired the OWLED 2011 workshop.

	'''Alan Ruttenberg'''		'''Alan Ruttenberg'''

Phismith at 09:46, 25 July 2012

2012-07-25T09:46:37Z

← Older revision		Revision as of 09:46, 25 July 2012
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	:09:30 How to Build an Ontology in Conformity with OBO Foundry Best Practice Principles (BS) [http://ontology.buffalo.edu/obofoundry/Graz2012/OBO%20Foundry%20Principles.pptx Slides1] [http://ontology.buffalo.edu/obofoundry/Graz2012/BestPractices.ppt Slides2]		:09:30 How to Build an Ontology in Conformity with OBO Foundry Best Practice Principles (BS) [http://ontology.buffalo.edu/obofoundry/Graz2012/OBO%20Foundry%20Principles.pptx Slides1] [http://ontology.buffalo.edu/obofoundry/Graz2012/BestPractices.ppt Slides2]
	:10:30 Break		:10:30 Break
	:10:45 OBO Foundry and the Semantic Web (MC, AR)		:10:45 OBO Foundry and the Semantic Web (MC, AR) [http://ontology.buffalo.edu/obofoundry/Graz2012/OBO_SemanticWeb.pdf Slides]
	:11:45 Next Steps (BS, MC) [http://ontology.buffalo.edu/obofoundry/Graz2012/3-Future.ppt Slides]		:11:45 Next Steps (BS, MC) [http://ontology.buffalo.edu/obofoundry/Graz2012/3-Future.ppt Slides]
	:12:30 Lunch		:12:30 Lunch

Phismith at 09:33, 21 July 2012

2012-07-21T09:33:19Z

← Older revision		Revision as of 09:33, 21 July 2012
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	:08:00 Tea/Coffee		:08:00 Tea/Coffee
	:08:30 Introduction: Background, Rationale and Current Structure of the OBO Foundry (BS)		:08:30 Introduction: Background, Rationale and Current Structure of the OBO Foundry (BS) [http://ontology.buffalo.edu/obofoundry/Graz2012/1-The_OBO_Foundry.ppt Slides]
	:09:30 How to Build an Ontology in Conformity with OBO Foundry Best Practice Principles (BS)		:09:30 How to Build an Ontology in Conformity with OBO Foundry Best Practice Principles (BS) [http://ontology.buffalo.edu/obofoundry/Graz2012/OBO%20Foundry%20Principles.pptx Slides1] [http://ontology.buffalo.edu/obofoundry/Graz2012/BestPractices.ppt Slides2]
	:10:30 Break		:10:30 Break
	:10:45 OBO Foundry and the Semantic Web (AR)		:10:45 OBO Foundry and the Semantic Web (MC, AR)
	:11:45 Next Steps (BS, AR)		:11:45 Next Steps (BS, MC) [http://ontology.buffalo.edu/obofoundry/Graz2012/3-Future.ppt Slides]
	:12:30 Lunch		:12:30 Lunch

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	:- How to participate in the future development of the Foundry		:- How to participate in the future development of the Foundry


	~~----~~
	~~'''Further information'''~~

	~~For further information please contact [mailto:haendel@ohsu.edu Melissa Haendel].~~


	----		----
			'''Faculty'''

	'''~~Faculty~~'''		'''Mélanie Courtot'''
			C-BRASS project manager at The University of British Columbia
			Software engineer - Ontologist at BCCRC

	'''Alan Ruttenberg'''		'''Alan Ruttenberg'''

Phismith at 17:18, 4 July 2012

2012-07-04T17:18:21Z

← Older revision		Revision as of 17:18, 4 July 2012
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	July 21, 2012, Morning		July 21, 2012, Morning
	----		----


	'''Venue'''		'''Venue'''
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	This tutorial will take place in association with the [http://www.kr-med.org/icbofois2012/ ICBO conference] taking place in Graz, Austria. Registration details are provided [http://kr-med.org/icbofois2012/registration.htm here].		This tutorial will take place in association with the [http://www.kr-med.org/icbofois2012/ ICBO conference] taking place in Graz, Austria. Registration details are provided [http://kr-med.org/icbofois2012/registration.htm here].
	----		----


	'''Schedule'''		'''Schedule'''
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	:11:45 Next Steps (BS, AR)		:11:45 Next Steps (BS, AR)
	:12:30 Lunch		:12:30 Lunch


	----		----

Phismith at 16:24, 4 July 2012

2012-07-04T16:24:58Z

← Older revision		Revision as of 16:24, 4 July 2012
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	----		----


			'''Schedule'''

			:08:00 Tea/Coffee
			:08:30 Introduction: Background, Rationale and Current Structure of the OBO Foundry (BS)
			:09:30 How to Build an Ontology in Conformity with OBO Foundry Best Practice Principles (BS)
			:10:30 Break
			:10:45 OBO Foundry and the Semantic Web (AR)
			:11:45 Next Steps (BS, AR)
			:12:30 Lunch


			----

	'''Abstract'''		'''Abstract'''

Phismith at 17:45, 24 May 2012

2012-05-24T17:45:12Z

← Older revision		Revision as of 17:45, 24 May 2012
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	'''Venue'''		'''Venue'''

	This tutorial will take place in association with the [http://www.kr-med.org/icbofois2012/ ICBO conference] taking place in Graz, Austria.		This tutorial will take place in association with the [http://www.kr-med.org/icbofois2012/ ICBO conference] taking place in Graz, Austria. Registration details are provided [http://kr-med.org/icbofois2012/registration.htm here].
	----		----

Phismith at 17:45, 21 May 2012

2012-05-21T17:45:36Z

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	Participants who attend the workshop will leave with an understanding of the OBO Foundry process including:		Participants who attend the workshop will leave with an understanding of the OBO Foundry process including:

			:- The benefits of re-using existing ontologies
	:- How to reserve a namespace and make your ontology available in the OBO Library		:- How to reserve a namespace and make your ontology available in the OBO Library
	:- What the OBO Foundry principles are, how they came to be, and how they change		:- What the OBO Foundry principles are, how they came to be, and how they change

Phismith at 17:40, 21 May 2012

2012-05-21T17:40:44Z

← Older revision		Revision as of 17:40, 21 May 2012
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	This tutorial aims to bring together consumers and developers of ontologies with the aim of forging community partnership. We will review the list of OBO Foundry core [http://obofoundry.org/wiki/index.php/Category:Principles principles], and provide guidance on their usage. This will help both existing and new OBO consortium ontology developers conform to these principles, as well as contribute new requirements. We will address the present and future use of the OBO Format and interoperability with		This tutorial aims to bring together consumers and developers of ontologies with the aim of forging community partnership. We will review the list of OBO Foundry core [http://obofoundry.org/wiki/index.php/Category:Principles principles], and provide guidance on their usage. This will help both existing and new OBO consortium ontology developers conform to these principles, as well as contribute new requirements. We will address the present and future use of the OBO Format and interoperability with
	OWL(http://purl.obolibrary.org/obo/oboformat/spec.html) and the use of new tools to facilitate format conversion.		OWL (http://purl.obolibrary.org/obo/oboformat/spec.html) and the use of new tools to facilitate format conversion.

Phismith at 17:39, 21 May 2012

2012-05-21T17:39:22Z

← Older revision		Revision as of 17:39, 21 May 2012
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	'''Faculty'''		'''Faculty'''

	~~'''Chris Mungall'''~~
	~~:Genomics Division, Lawrence Berkeley National Laboratory~~
	~~:email cjmungall@lbl.gov~~

	~~Chris Mungall is a computer scientist at LBNL with an interest in applications of biological~~
	~~ontologies. He is part of the Gene Ontology Consortium, where he leads the software group and~~
	~~works on the maintenance of the GO and the cell type ontology. He is also involved in a~~
	~~number of other Open Bio-Ontology (OBO) efforts, and with the organization of the OBO~~
	~~Foundry. His research is in applying phenotype ontology based algorithms for linking animal~~
	~~models to human diseases using a diversity of OBO ontologies. One aspect of this work was~~
	~~integrating multiple vertebrate anatomy ontologies through a bridging ontology (Uberon).~~

	'''Alan Ruttenberg'''		'''Alan Ruttenberg'''

Phismith at 16:00, 27 April 2012

2012-04-27T16:00:06Z

← Older revision		Revision as of 16:00, 27 April 2012
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	'''Venue'''		'''Venue'''

	This ~~workshop~~ will take place in association with the [http://www.kr-med.org/icbofois2012/ ICBO conference] taking place in Graz, Austria.		This tutorial will take place in association with the [http://www.kr-med.org/icbofois2012/ ICBO conference] taking place in Graz, Austria.
	----		----

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	'''Faculty'''		'''Faculty'''

	~~'''Melissa Haendel'''~~
	~~:Oregon Health & Science University~~
	~~:email haendel@ohsu.edu~~

	~~Dr. Haendel has co-lead several previous ontology workshops and has participated in~~
	~~development of a number of other Open Bio-Ontology (OBO) standards for anatomy (CARO,~~
	~~Uberon, VAO, ZFA), phenotype (PATO), and biomedical resource ontologies (OBI). She is~~
	~~currently working on the ontology driven eagle-i research resource discovery platform. Her~~
	~~interest is in using ontologies for translational research to link human diseases to model~~
	~~organism data, and to infer experimental details relating to the use of organismally derived~~
	~~research resources.~~

	'''Chris Mungall'''		'''Chris Mungall'''