Ontology Modules - Revision history

Phismith: /* General Ontology */

2022-10-30T22:39:33Z

General Ontology

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	'''Werner Ceusters (Bioinformatics/Psychiatry): Particulars in Focus''' [http://www.referent-tracking.com/RTU/sendfile/?file=20120910-OntologyClassOnReferentTracking.ppt Slides]		'''Werner Ceusters (Bioinformatics/Psychiatry): Particulars in Focus''' [http://www.referent-tracking.com/RTU/sendfile/?file=20120910-OntologyClassOnReferentTracking.ppt Slides]
	*[~~http~~://~~mediastream~~.~~buffalo~~.~~edu/Content~~/~~research~~/~~phismith/Ontology2012/2~~-~~Referent-Tracking.wmv~~ Video]		*[https://buffalo.box.com/v/REFERENT-TRACKING Video]
	:Referent Tracking (RT) is a methodology to create digital copies of the parts of the world we are interested in. It is based on Basic Formal Ontology, but focuses on particulars rather than universals. The goal is to create information systems in such a way that (1) the information they contain mimics the structure of the corresponding portions of reality and (2) they can make optimal use of ontologies and terminologies.		:Referent Tracking (RT) is a methodology to create digital copies of the parts of the world we are interested in. It is based on Basic Formal Ontology, but focuses on particulars rather than universals. The goal is to create information systems in such a way that (1) the information they contain mimics the structure of the corresponding portions of reality and (2) they can make optimal use of ontologies and terminologies.

Phismith at 20:21, 17 August 2017

2017-08-17T20:21:53Z

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	:*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/3-Mental-functioning.wmv Video]		:*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/3-Mental-functioning.wmv Video]

	'''[http://www.affective-sciences.org/user/346 Janna Hastings] (Swiss Center for Affective Sciences and European Bioinformatics Institute): Representing Mental Functioning''' [http://ontology.buffalo.edu/12/MFO-~~Hastings~~.pptx Hastings Slides]		'''[http://www.affective-sciences.org/user/346 Janna Hastings] (Swiss Center for Affective Sciences and European Bioinformatics Institute): Representing Mental Functioning''' [http://ontology.buffalo.edu/12/MFO-hastings.pptx Hastings Slides]

	:Mental functioning includes all the faculties of the mind, e.g., perception, planning, language, memory, emotion, and self-representation. The study of these processes cuts across disciplines such as psychology, psychiatry, neuroscience, and biomedicine. The Mental Functioning Ontology (MFO) is designed to provide a means for the common description of data in all of these disciplines, in order to support data aggregation and comparison. For background material see [http://kr-med.org/icbofois2012/mfo/ here] (slides) and [http://kr-med.org/icbofois2012/proceedings/ICBOFOIS2012Workshops/ICBO2012MFO/ICBO-2012-MFO-WS.pdf here] (papers).		:Mental functioning includes all the faculties of the mind, e.g., perception, planning, language, memory, emotion, and self-representation. The study of these processes cuts across disciplines such as psychology, psychiatry, neuroscience, and biomedicine. The Mental Functioning Ontology (MFO) is designed to provide a means for the common description of data in all of these disciplines, in order to support data aggregation and comparison. For background material see [http://kr-med.org/icbofois2012/mfo/ here] (slides) and [http://kr-med.org/icbofois2012/proceedings/ICBOFOIS2012Workshops/ICBO2012MFO/ICBO-2012-MFO-WS.pdf here] (papers).
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	'''Albert Goldfain: The IDO-Staph Extension [http://ontology.buffalo.edu/12/IDO-Staph.pptx Slides]		'''Albert Goldfain: The IDO-Staph Extension [http://ontology.buffalo.edu/12/IDO-Staph.pptx Slides]

	[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/8-IDO-Staph-Nov2012.wmv Video] (for initial 10 minutes use slides from [http://ontology.buffalo.edu/12/IDO-Staph.pptx here])		*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/8-IDO-Staph-Nov2012.wmv Video] (for initial 10 minutes use slides from [http://ontology.buffalo.edu/12/IDO-Staph_.pptx here])
	::''Staph aureus'' diseases and their differentiation		::''Staph aureus'' diseases and their differentiation
	::Antibiotic Resistance (Blocking, Complemenatary and Reciprocal Dispositions) (Albert Goldfain)		::Antibiotic Resistance (Blocking, Complemenatary and Reciprocal Dispositions) (Albert Goldfain)

Phismith: /* General Ontology */

2014-07-11T23:22:17Z

General Ontology

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	== General Ontology ==		== General Ontology ==

	'''Barry Smith: Introduction to Ontology''' [http://org.buffalo.edu/Ontology_in_Buffalo_Aug_27_2012.ppt Slides]		'''Barry Smith: Introduction to Ontology (2012)''' [http://org.buffalo.edu/Ontology_in_Buffalo_Aug_27_2012.ppt Slides]
	*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/1-Introduction-to-ontology.wmv Video]		*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/1-Introduction-to-ontology.wmv Video]
	:Provides a basic introduction to ontology by addressing questions such as: What is an ontology? What are the differences and interrelations between ontology (philosophy), ontology (science), and ontology (engineering)? How are ontologies used? We will also provide an introduction to Basic Formal Ontology (BFO), focusing on a discussion of the question: What is a musical score?		:Provides a basic introduction to ontology by addressing questions such as: What is an ontology? What are the differences and interrelations between ontology (philosophy), ontology (science), and ontology (engineering)? How are ontologies used? We will also provide an introduction to Basic Formal Ontology (BFO), focusing on a discussion of the question: What is a musical score?

Phismith: /* Military Ontology */

2013-12-05T19:20:38Z

Military Ontology

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	== Military Ontology ==		== Military Ontology ==


	Video presentations on military ontology are provided [http://militaryontology.com/military-ontology-videos.html here].		Video presentations on military ontology are provided [http://militaryontology.com/military-ontology-videos.html here].
	----		----

			== [[Ontological Engineering]] ==

			Modules from Fall 2013 Graduate Seminar, Buffalo, NY

	== Military Intelligence Ontology==		== Military Intelligence Ontology==

Phismith at 14:29, 21 February 2013

2013-02-21T14:29:23Z

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	----		----
	Link to: [[Streaming Video Ontology Training Courses]]		Link to: [http://ncorwiki.buffalo.edu/index.php/Streaming_Video_Ontology_Training_Courses Streaming Video Ontology Training Courses]

Phismith at 14:21, 21 February 2013

2013-02-21T14:21:34Z

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	~~'''== Modules =='''~~

	== General Ontology ==		== General Ontology ==

Phismith at 14:21, 21 February 2013

2013-02-21T14:21:14Z

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	----		----
	[[Streaming Video Ontology Training Courses]]		Link to: [[Streaming Video Ontology Training Courses]]

Phismith at 14:20, 21 February 2013

2013-02-21T14:20:58Z

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	----		----
			[[Streaming Video Ontology Training Courses]]


			'''== Modules =='''

	== General Ontology ==		== General Ontology ==

Phismith: /* Ontology of Mind */

2013-01-05T21:05:29Z

Ontology of Mind

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	'''Barry Smith: How To Do Things With Diagrams''' [http://ontology.buffalo.edu/12/How-to-do-things-with-diagrams-Sep25-2012.pptx Slides]		'''Barry Smith: How To Do Things With Diagrams''' [http://ontology.buffalo.edu/12/How-to-do-things-with-diagrams-Sep25-2012.pptx Slides]
	*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/4-Diagrams.wmv Video]		*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/4-Diagrams.wmv Video]
	*[http://i2.~~ytimg~~.com/~~vi/~~AaFnMesr6uQ~~/mqdefault.jpg~~ Shorter Youtube Video]		*[http://www.youtube.com/watch?v=AaFnMesr6uQ Shorter Youtube Video]
	:Explores some of the ways in which the theory of speech acts can throw light on the role of diagrams and of diagrammatic symbologies in areas such as chess, music, chemistry and military planning. The ontology of processes and process representations plays a central role.		:Explores some of the ways in which the theory of speech acts can throw light on the role of diagrams and of diagrammatic symbologies in areas such as chess, music, chemistry and military planning. The ontology of processes and process representations plays a central role.

Phismith at 01:47, 29 December 2012

2012-12-29T01:47:14Z

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	'''Alexander Diehl (Department of Neurology, University at Buffalo): From the Gene Ontology to the Neurological Disease Ontology'''		'''Alexander Diehl (Department of Neurology, University at Buffalo): From the Gene Ontology to the Neurological Disease Ontology''' [http://ontology.buffalo.edu/12/Diehl-GO-CL-ND.pptx Slides]
	:[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/7-GO.wmv Video]		*[http://mediastream.buffalo.edu/Content/research/phismith/Ontology2012/7-GO.wmv Video]
	:The first part of the talk covers the Gene (GO) and Cell Ontologies (CL), covering issues of ontology structure, development, use in annotation, and exploitation for biological research. The second part will cover the Neurological Disease (ND) and Neuropsychological Testing Ontologies (NPT).		:The first part of the talk covers the Gene (GO) and Cell Ontologies (CL), covering issues of ontology structure, development, use in annotation, and exploitation for biological research. The second part will cover the Neurological Disease (ND) and Neuropsychological Testing Ontologies (NPT).