Ontology and the Future of Laboratory Information - Revision history

Phismith at 23:40, 4 April 2014

2014-04-04T23:40:12Z

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	::Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.		::Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.

	[http://ncor.buffalo.edu/2014/Parrish.pptx Slides]		*[http://ncor.buffalo.edu/2014/Parrish.pptx Slides]

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Phismith at 23:39, 4 April 2014

2014-04-04T23:39:53Z

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	::Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.		::Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.

			[http://ncor.buffalo.edu/2014/Parrish.pptx Slides]

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Phismith at 23:09, 28 March 2014

2014-03-28T23:09:53Z

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	[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.		::[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.

	[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]		[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]

Phismith at 23:09, 28 March 2014

2014-03-28T23:09:35Z

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	*Abstract:		*Abstract:

	Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.		::Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.

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Phismith at 23:09, 28 March 2014

2014-03-28T23:09:20Z

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	*CTRC 5th Floor, Conference Room 5019A		*CTRC 5th Floor, Conference Room 5019A

	*

	*Abstract:		*Abstract:
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	All are welcome to attend		All are welcome to attend

	~~[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]~~

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	[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.		[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.

			[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]

Phismith at 23:08, 28 March 2014

2014-03-28T23:08:57Z

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	'''Talk by David Parrish'''		'''Talk by David Parrish'''

	*~~When:~~ Friday, April 4, 2014 9:30 – 11am		*Friday, April 4, 2014 9:30 – 11am

	*~~Where:~~ CTRC 5th Floor, Conference Room 5019A		*CTRC 5th Floor, Conference Room 5019A

	*~~[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]~~		*

	*Abstract:		*Abstract:
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	All are welcome to attend		All are welcome to attend

			[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]

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	[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.		[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.

Phismith at 23:08, 28 March 2014

2014-03-28T23:08:30Z

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	*Where: CTRC 5th Floor, Conference Room 5019A		*Where: CTRC 5th Floor, Conference Room 5019A

			*[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]

	*Abstract:		*Abstract:

	Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.		Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.

	*[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]

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Phismith at 23:08, 28 March 2014

2014-03-28T23:08:07Z

← Older revision		Revision as of 23:08, 28 March 2014
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	Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.		Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.

			*[http://ncor.buffalo.edu/2014/Parrish-poster.pdf Poster]

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Phismith at 21:53, 28 March 2014

2014-03-28T21:53:48Z

← Older revision		Revision as of 21:53, 28 March 2014
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	Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.		Currently, laboratory information management systems (LIMS) are designed to support the collectors, rather than the users, of data. Integration of data from one study to the next thus has to be performed retrospectively, through manual effort, and with costs to data quality. The alternative is prospective integration. This would require an ontology framework that can inform any LIMS and that can be used to define each study in a computable way from the very start.

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	This talk is sponsored by:		This talk is sponsored by:
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	All are welcome to attend		All are welcome to attend

			----

	[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.		[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.

Phismith at 21:53, 28 March 2014

2014-03-28T21:53:07Z

← Older revision		Revision as of 21:53, 28 March 2014
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	All are welcome to attend		All are welcome to attend

	[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving ~~as consultant to Roswell Park and~~ as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs.		[https://www.linkedin.com/profile/view?id=10415055&authType=NAME_SEARCH&authToken=vTmu&locale=en_US&srchid=27153661396043238796&srchindex=1&srchtotal=279&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661396043238796%2CVSRPtargetId%3A10415055%2CVSRPcmpt%3Aprimary David Parrish] has played an important role in the development of laboratory and biobanking informatics, including serving as Director of Bioinformatics for the Immune Tolerance Network. Currently he works as senior information architect at [http://sampleminded.com Sampleminded] and is providing support and guidance for the [http://www.niaid.nih.gov/about/organization/dcr/ocsirf/Pages/OCSIFR.aspx NIAID Integrated Research Facility] (IRF) in the design and deployment of their Research Operations Management System (ROMS). The IRF ROMS leverages commercial off-the-shelf (COTS) information solutions in support of the definition, design conduct and evaluation of sponsored research programs. He is also a consultant to Roswell Park Cancer Institute.