Third CTS Ontology Workshop - Revision history

Phismith at 00:21, 23 January 2014

2014-01-23T00:21:06Z

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			See: [[Ontology and Imaging Informatics]]
	See [[Ontology and Imaging Informatics]]

Phismith: Replaced content with ' See Ontology and Imaging Informatics'

2014-01-23T00:20:49Z

Replaced content with ' See Ontology and Imaging Informatics'

← Older revision		Revision as of 00:20, 23 January 2014
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	~~[[Ontology and Imaging Informatics]]~~
	~~The 3rd CTS Ontology Workshop~~

	*Venue: [~~http://www.ramadahotelamherst.com/ Ramada Inn Hotel and Conference Center, Amherst, NY 14068]~~		See [[Ontology and Imaging Informatics]]
	*Dates
	~~:*Tutorial: June 23, 2014~~
	~~:*Workshop: June 24-25, 2014~~
	*Goals: The goal of this workshop is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond.

	~~:The workshop will be preceded by a tutorial (Day 0) providing an introduction to biomedical imaging ontology.~~

	~~:Day 1 of the workshop will consist in an overview of major contributions to biomedical imaging in radiology and digital pathology with a view towards coordination and exchange of ideas.~~

	:Day 2 will allow consist of a number of breakout groups addressing specific goals of their respective communities. One such group will focus on a draft Digital Pathology Image Ontology, which will be distributed to interested participants in advance. Another group will address the coordination of research in digital imaging across the CTSA consortium.

	~~:The meeting will conclude with reports from the breakout groups and with a session devoted to future plans.~~

	~~:Examples of the types of subtopics to be addressed include:~~
	~~::LIMS interoperability~~
	~~::Immunohistochemistry Imaging~~
	~~::Standards for biomedical video data~~
	~~::[http://www.openmicroscopy.org/ The Open Microscopy Environment] (OME)~~
	~~::[[Gamuts \| The Radiology Gamuts Ontology]]~~
	~~::[http://www.aperio.com/healthcare/eslide Aperio ePathology]~~
	::[~~http://obi-ontology.org/page/Main_Page~~ Ontology ~~for Biomedical Investigations] (OBI)~~
	*Space for this meeting is limited and ~~intending participants are encouraged to write to [mailto:phismith@buffalo.edu Barry Smith] as soon as possible.~~

	~~== '''Draft Schedule: Tutorial''' ==~~

	~~<u>Monday, June 23</u>~~

	~~'''Tutorial'''~~

	~~10:00 Registration~~

	~~10:30 [http://www.ccmb.med.umich.edu/node/192 Ulysses Balis] (Michigan): Introduction to Imaging Informatics: The Problem of Image Data Interoperability~~

	~~12:30 Lunch~~

	~~13:30 [http://ontology.buffalo.edu/smith Barry Smith] (Buffalo): Introduction to Ontology for~~ Imaging Informatics

	~~15:00 Break~~

	~~15:30 [http://dbmi.uams.edu/faculty/william-r-hogan-m-d/ William Hogan] (Arkansas): Ontology in the CTSA Consortium~~

	~~== '''Draft Schedule: Workshop''' ==~~

	~~<u>Tuesday, June 24</u>~~

	~~:8:30 Breakfast and Registration~~

	~~:9:15 Participant Introductions~~

	~~:9:30 Keynote Address: [http://www.stanford.edu/~rubin/ '''Daniel Rubin~~] ~~(Stanford University): Imaging Big Data'''~~
	~~::Driving use cases for imaging in the era of Big Data~~
	~~::The central role of imaging ontology~~
	~~::Example projects using ontologies~~

	~~:10:30 Break~~

	~~:11:00 '''[http://www.dbmi.pitt.edu/person/michael-j-becich-md-phd Michael J. Becich]: An Overview of Standards and Initiatives in Digital Pathology'''~~

	~~:12:00 Lunch~~

	~~:13:00 '''[http://www.mcw.edu/radiology/faculty/CharlesKahn.htm Charles Kahn]: Radiology Gamuts Ontology: Differential Diagnosis in Radiology'''~~

	:14:00 '''[http://medicine.osu.edu/bmi/people/metin_gurcan/pages/index.aspx Metin N. Gurcan], [http://engineering.case.edu/centers/ccipd/ Anant Madabhushi] and [http://medicine.buffalo.edu/faculty/profile.html?ubit=johntoma John Tomaszewski]: Histopathological Image Analysis (HIMA) and Ontology'''

	~~:15:00 Break~~

	~~:15:30 TBA~~

	~~<u>Wednesday, June 25</u>~~

	~~:8:30 Breakfast~~

	~~:9:00 Digital Pathology: Practical sessions devoted to creating a strategy to promote interoperability of digital pathology data and systems~~

	~~:12:00 Lunch~~

	~~:13:00 Group Meetings~~

	~~::Hackathon: Building an Ontology for Digital Pathology~~
	~~::CTS Ontology Affinity Group: Digital Pathology across the CTSA Consortium: Identifying What There Is and Identifying Opportunities for Collaboration~~

	~~:Other breakout sessions will be organized according to demand~~

	~~16:00 Close~~

	~~----~~

	~~== Sponsors ==~~

	*[http://www.smbs.buffalo.edu/path/index.htm Department of Pathology and Anatomy], School of Medicine and Biomedical Sciences, University at Buffalo

	*[http://bioontologies.org National Center for Biomedical Ontology]

	*[https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group].

	~~----~~

	~~== Organizing Committee ==~~

	~~:Barry Smith (Buffalo)~~
	~~:William Hogan (Arkansas)~~
	~~:John Tomaszewski (Buffalo)~~


	~~== Initial List of Participants ==~~

	~~Ulysses J. Balis (Ann Arbor)~~

	~~Michael Becich (Pittsburgh)~~

	~~Michael Dwyer (Buffalo)~~

	~~Metin Gurcan (Ohio)~~

	~~William Hogan (Arkansas)~~

	~~Charles E. Kahn (Milwaukee)~~

	~~Anant Madabhushi (Case)~~

	~~Anna Maria Masci (Duke)~~

	~~Daniel Rubin (Stanford)~~

	~~Barry Smith (Buffalo)~~

	~~Jose Luis Tapia (Buffalo)~~

	~~John Tomaszewski (Buffalo)~~

Phismith at 00:18, 23 January 2014

2014-01-23T00:18:27Z

← Older revision		Revision as of 00:18, 23 January 2014
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	== Ontology and Imaging Informatics ==		[[Ontology and Imaging Informatics]]
			The 3rd CTS Ontology Workshop

	*Venue: [http://www.ramadahotelamherst.com/ Ramada Inn Hotel and Conference Center, Amherst, NY 14068]		*Venue: [http://www.ramadahotelamherst.com/ Ramada Inn Hotel and Conference Center, Amherst, NY 14068]

Phismith: /* Ontology and Imaging Informatics */

2014-01-22T23:33:17Z

Ontology and Imaging Informatics

← Older revision		Revision as of 23:33, 22 January 2014
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	*Goals: The goal of this workshop is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond.		*Goals: The goal of this workshop is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond.

	The workshop will be preceded by a tutorial (Day 0) providing an introduction to biomedical imaging ontology.		:The workshop will be preceded by a tutorial (Day 0) providing an introduction to biomedical imaging ontology.

	Day 1 of the workshop will consist in an overview of major contributions to biomedical imaging in radiology and digital pathology with a view towards coordination and exchange of ideas.		:Day 1 of the workshop will consist in an overview of major contributions to biomedical imaging in radiology and digital pathology with a view towards coordination and exchange of ideas.

	Day 2 will allow consist of a number of breakout groups addressing specific goals of their respective communities. One such group will focus on a draft Digital Pathology Image Ontology, which will be distributed to interested participants in advance. Another group will address the coordination of research in digital imaging across the CTSA consortium.		:Day 2 will allow consist of a number of breakout groups addressing specific goals of their respective communities. One such group will focus on a draft Digital Pathology Image Ontology, which will be distributed to interested participants in advance. Another group will address the coordination of research in digital imaging across the CTSA consortium.

	The meeting will conclude with reports from the breakout groups and with a session devoted to future plans.		:The meeting will conclude with reports from the breakout groups and with a session devoted to future plans.

	Examples of the types of subtopics to be addressed include:		:Examples of the types of subtopics to be addressed include:
	::LIMS interoperability		::LIMS interoperability
	::Immunohistochemistry Imaging		::Immunohistochemistry Imaging

Phismith at 23:32, 22 January 2014

2014-01-22T23:32:39Z

← Older revision		Revision as of 23:32, 22 January 2014
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	:*Tutorial: June 23, 2014		:*Tutorial: June 23, 2014
	:*Workshop: June 24-25, 2014		:*Workshop: June 24-25, 2014
	*Goals: The goal of this ~~meeting~~ is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond. Examples of the types of subtopics to be addressed include:		*Goals: The goal of this workshop is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond.

			The workshop will be preceded by a tutorial (Day 0) providing an introduction to biomedical imaging ontology.

			Day 1 of the workshop will consist in an overview of major contributions to biomedical imaging in radiology and digital pathology with a view towards coordination and exchange of ideas.

			Day 2 will allow consist of a number of breakout groups addressing specific goals of their respective communities. One such group will focus on a draft Digital Pathology Image Ontology, which will be distributed to interested participants in advance. Another group will address the coordination of research in digital imaging across the CTSA consortium.

			The meeting will conclude with reports from the breakout groups and with a session devoted to future plans.

			Examples of the types of subtopics to be addressed include:
	::LIMS interoperability		::LIMS interoperability
	::Immunohistochemistry Imaging		::Immunohistochemistry Imaging

Phismith: /* Draft Schedule: Workshop */

2014-01-22T21:15:00Z

Draft Schedule: Workshop

← Older revision		Revision as of 21:15, 22 January 2014
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	:10:30 Break		:10:30 Break

	:11:00 Digital Pathology ~~across the CTSA Consortium: Identifying what there is~~		:11:00 '''[http://www.dbmi.pitt.edu/person/michael-j-becich-md-phd Michael J. Becich]: An Overview of Standards and Initiatives in Digital Pathology'''

	:12:30 Lunch		:12:00 Lunch

	:13:30 '''[http://www.~~dbmi.pitt~~.edu/~~person~~/~~michael-j-becich-md-phd Michael J~~. ~~Becich~~]: ~~An Overview of Standards and Initiatives~~ in ~~Digital Pathology~~'''		:13:00 '''[http://www.mcw.edu/radiology/faculty/CharlesKahn.htm Charles Kahn]: Radiology Gamuts Ontology: Differential Diagnosis in Radiology'''

	:14:30 '''[http://~~www~~.~~mcw~~.edu/~~radiology~~/faculty/~~CharlesKahn~~.~~htm Charles Kahn~~]: ~~Radiology Gamuts~~ Ontology~~: Differential Diagnosis in Radiology~~'''		:14:00 '''[http://medicine.osu.edu/bmi/people/metin_gurcan/pages/index.aspx Metin N. Gurcan], [http://engineering.case.edu/centers/ccipd/ Anant Madabhushi] and [http://medicine.buffalo.edu/faculty/profile.html?ubit=johntoma John Tomaszewski]: Histopathological Image Analysis (HIMA) and Ontology'''

	:15:30 Break		:15:00 Break

	:16:00 '''[http://medicine.osu.edu/bmi/people/metin_gurcan/pages/index.aspx Metin N. Gurcan], [http://engineering.case.edu/centers/ccipd/ Anant Madabhushi] and [http://medicine.buffalo.edu/faculty/profile.html?ubit=johntoma John Tomaszewski]: Histopathological Image Analysis (HIMA) and Ontology'''		:15:30 TBA

	<u>Wednesday, June 25</u>		<u>Wednesday, June 25</u>
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	::Hackathon: Building an Ontology for Digital Pathology		::Hackathon: Building an Ontology for Digital Pathology
	::CTS Ontology Affinity Group		::CTS Ontology Affinity Group: Digital Pathology across the CTSA Consortium: Identifying What There Is and Identifying Opportunities for Collaboration

	:Other breakout sessions will be organized according to demand		:Other breakout sessions will be organized according to demand

Phismith: /* Draft Schedule: Workshop */

2014-01-22T17:40:15Z

Draft Schedule: Workshop

← Older revision		Revision as of 17:40, 22 January 2014
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	:14:30 '''[http://www.mcw.edu/radiology/faculty/CharlesKahn.htm Charles Kahn]: Radiology Gamuts Ontology: Differential Diagnosis in Radiology'''		:14:30 '''[http://www.mcw.edu/radiology/faculty/CharlesKahn.htm Charles Kahn]: Radiology Gamuts Ontology: Differential Diagnosis in Radiology'''

	~~Identifying successful ontology-based initiatives in Digital Pathology~~ and ~~Imaging Research~~		:15:30 Break

			:16:00 '''[http://medicine.osu.edu/bmi/people/metin_gurcan/pages/index.aspx Metin N. Gurcan], [http://engineering.case.edu/centers/ccipd/ Anant Madabhushi] and [http://medicine.buffalo.edu/faculty/profile.html?ubit=johntoma John Tomaszewski]: Histopathological Image Analysis (HIMA) and Ontology'''

	<u>Wednesday, June 25</u>		<u>Wednesday, June 25</u>
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	::CTS Ontology Affinity Group		::CTS Ontology Affinity Group

	:Other breakout sessions ~~may~~ be organized according to demand		:Other breakout sessions will be organized according to demand

	16:00 Close		16:00 Close

Phismith: /* Ontology and Imaging Informatics */

2014-01-17T17:06:39Z

Ontology and Imaging Informatics

← Older revision		Revision as of 17:06, 17 January 2014
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	::[http://www.aperio.com/healthcare/eslide Aperio ePathology]		::[http://www.aperio.com/healthcare/eslide Aperio ePathology]
	::[http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] (OBI)		::[http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] (OBI)
	*Space for this meeting is limited and intending participants are ~~invited~~ to write to [mailto:phismith@buffalo.edu Barry Smith] as soon as possible.		*Space for this meeting is limited and intending participants are encouraged to write to [mailto:phismith@buffalo.edu Barry Smith] as soon as possible.

	== '''Draft Schedule: Tutorial''' ==		== '''Draft Schedule: Tutorial''' ==

Phismith: /* Initial List of Participants */

2014-01-17T17:05:36Z

Initial List of Participants

← Older revision		Revision as of 17:05, 17 January 2014
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	Michael Dwyer (Buffalo)		Michael Dwyer (Buffalo)

			Metin Gurcan (Ohio)

	William Hogan (Arkansas)		William Hogan (Arkansas)

	Charles E. Kahn (Milwaukee)		Charles E. Kahn (Milwaukee)

			Anant Madabhushi (Case)

	Anna Maria Masci (Duke)		Anna Maria Masci (Duke)

Phismith: /* Ontology and Imaging Informatics */

2014-01-17T17:03:34Z

Ontology and Imaging Informatics

← Older revision		Revision as of 17:03, 17 January 2014
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	::[http://www.aperio.com/healthcare/eslide Aperio ePathology]		::[http://www.aperio.com/healthcare/eslide Aperio ePathology]
	::[http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] (OBI)		::[http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] (OBI)
			*Space for this meeting is limited and intending participants are invited to write to [mailto:phismith@buffalo.edu Barry Smith] as soon as possible.
	*~~Further information:~~ [mailto:phismith@buffalo.edu Barry Smith]

	== '''Draft Schedule: Tutorial''' ==		== '''Draft Schedule: Tutorial''' ==