ImmPort: Difference between revisions
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'''[[ImmPort]] | '''Training and Strategy Workshop for [[ImmPort]] Data Submitters''' | ||
'''Date:''' October 9-10, 2013 | '''Date:''' October 9-10, 2013 | ||
| Line 13: | Line 13: | ||
---- | ---- | ||
''' | '''Schedule''' | ||
<u>'''Day 1: Wednesday, October 9'''</u> | <u>'''Day 1: Wednesday, October 9'''</u> | ||
| Line 26: | Line 25: | ||
9:00 David Ikle (Rho Federal): '''Database Creation and Data Analysis Processes at Rho Federal''' | 9:00 David Ikle (Rho Federal): '''Database Creation and Data Analysis Processes at Rho Federal''' | ||
9:30 Barry Smith : '''A Practical Introduction to ImmPort and to NIH Mandates for Data Sharing and Reuse''' | 9:30 Barry Smith : '''A Practical Introduction to ImmPort and to NIH Mandates for Data Sharing and Reuse''' [http://ncor.buffalo.edu/2013/Rho/Smith-Rho.pptx Slides] | ||
:-- overview of the goals of ImmPort | :-- overview of the goals of ImmPort | ||
:-- role of standards and ontologies (1) for data submission (2) for data reuse | :-- role of standards and ontologies (1) for data submission (2) for data reuse | ||
:-- successes and failures we can learn from | :-- successes and failures we can learn from | ||
10:00 Anna Maria Masci (Duke University): The ImmPort Submission Process. A View From Biology [http://ncor.buffalo.edu/2013/Rho/MASCIAM.pptx Slides] | 10:00 Anna Maria Masci (Duke University): '''The ImmPort Submission Process. A View From Biology''' [http://ncor.buffalo.edu/2013/Rho/MASCIAM.pptx Slides] | ||
Masci: '''Which Standards Do We Need For Data Analysis''' [http://ncor.buffalo.edu/2013/Rho/Masci-standards.pptx Slides] | |||
10:30 Break | 10:30 Break | ||
10:45 NIAID Asthma Consortium Facilitated Data Explorer | 10:45 Herman Mitchell and Jeremy Wildire: '''NIAID Asthma Consortium Facilitated Data Explorer''' | ||
11:00 Discussion leader: Barry Smith | 11:00 Discussion leader: Barry Smith | ||
| Line 44: | Line 45: | ||
12:00 Lunch | 12:00 Lunch | ||
13:00 Jeff Wiser (ImmPort / Northrop Grumman): Training session on submitting data to immPort | 13:00 Jeff Wiser (ImmPort / Northrop Grumman): '''Training session on submitting data to immPort | ||
:-- the need to grow ImmPort's clinical submission area | :-- the need to grow ImmPort's clinical submission area | ||
14:30 Break | 14:30 Break | ||
15:00 John Lim and Karen Kesler: The ImmPort Submission Process: Two Views from Rho | 15:00 John Lim and Karen Kesler (Rho): '''The ImmPort Submission Process: Two Views from Rho''' | ||
15:30 Jeff Abolafia (Rho): '''CDISC, C-DASH, SDTM, ADM''' | |||
16:00 Discussion leader: Jeff Wiser | 16:00 Discussion leader: Jeff Wiser | ||
| Line 62: | Line 65: | ||
8:00 Breakfast | 8:00 Breakfast | ||
8:30 Lindsay Cowell | 8:30 Lindsay Cowell: '''Immunology Ontologies''' [http://ncor.buffalo.edu/2013/Rho/Cowell-Rho.ppt Slides] | ||
9:45 Barry Smith: '''Introduction to Allergy Ontology''' | 9:45 Barry Smith: '''Introduction to Allergy Ontology''' [http://ncor.buffalo.edu/2013/Rho/Smith-Allergy.ppt Slides] | ||
10:45 Break | 10:45 Break | ||
| Line 71: | Line 74: | ||
12:00 Close | 12:00 Close | ||
[http://ncor.buffalo.edu/2013/Rho/Smith-Summary.pptx Slides summarizing results] | |||
---- | ---- | ||
External participants | External participants | ||
:[http://profiles.utsouthwestern.edu/profile/120432/lindsay-cowell.html Lindsay Cowell] is a computational immunologist at UT Southwestern | :[http://profiles.utsouthwestern.edu/profile/120432/lindsay-cowell.html Lindsay Cowell] is a computational immunologist at UT Southwestern | ||
:[http://www.linkedin.com/profile/view?id=41459681&trk=nav_responsive_tab_profile Anna Maria Masci] is in charge of submission of data to ImmPort for the Multiscale System Immunology project[http://ontology.buffalo.edu/smith/ Barry Smith] is ImmPort ontology lead. | :[http://www.linkedin.com/profile/view?id=41459681&trk=nav_responsive_tab_profile Anna Maria Masci] is in charge of submission of data to ImmPort for the Multiscale System Immunology project | ||
:[http://ontology.buffalo.edu/smith/ Barry Smith] is ImmPort ontology lead. | |||
:[http://www.linkedin.com/pub/ravi-shankar/4/b17/b52 Ravi Shankar] is a researcher in the Atul Butte Lab at Stanford working on clinical trial ontology | :[http://www.linkedin.com/pub/ravi-shankar/4/b17/b52 Ravi Shankar] is a researcher in the Atul Butte Lab at Stanford working on clinical trial ontology | ||
:[http://www.linkedin.com/profile/view?id=6635310&authType=NAME_SEARCH&authToken=vXQ9&locale=en_US&srchid=27153661377103222322&srchindex=1&srchtotal=10&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661377103222322%2CVSRPtargetId%3A6635310%2CVSRPcmpt%3Aprimary Jeff Wiser] manages the ImmPort project at Northrop Grumman. | :[http://www.linkedin.com/profile/view?id=6635310&authType=NAME_SEARCH&authToken=vXQ9&locale=en_US&srchid=27153661377103222322&srchindex=1&srchtotal=10&trk=vsrp_people_res_name&trkInfo=VSRPsearchId%3A27153661377103222322%2CVSRPtargetId%3A6635310%2CVSRPcmpt%3Aprimary Jeff Wiser] manages the ImmPort project at Northrop Grumman. | ||
Latest revision as of 18:19, 17 October 2013
Training and Strategy Workshop for ImmPort Data Submitters
Date: October 9-10, 2013
Venue: Alpha-Beta Room, Rho Federal Systems Division (6330 Quadrangle Dr. Suite 500, Chapel Hill, NC 27517)
Parking and Security: Non-Rho attendees can park anywhere, although there are visitor parking spaces near the front door. You need to check into the front desk where you will receive a name tag and be escorted to the room where we will be meeting. People who are traveling and have luggage with them have the option of leaving items in a locked closet during the meeting.
Goals of this meeting:
- to provide assistance to actual and potential submitters of data to ImmPort: how to make submission more intuitive and more efficient?
- to enable interaction between submitters and those charged with managing and improving ImmPort in order to identify problems and opportunities for improvement
- to improve extraction of data from ImmPort: how can we make ImmPort data more easily discoverable and more useful to researchers?
Schedule
Day 1: Wednesday, October 9
8:00 Breakfast
8:45 Barry Smith (ImmPort / University at Buffalo): Opening Remarks
8:50 Participant Self-Introductions
9:00 David Ikle (Rho Federal): Database Creation and Data Analysis Processes at Rho Federal
9:30 Barry Smith : A Practical Introduction to ImmPort and to NIH Mandates for Data Sharing and Reuse Slides
- -- overview of the goals of ImmPort
- -- role of standards and ontologies (1) for data submission (2) for data reuse
- -- successes and failures we can learn from
10:00 Anna Maria Masci (Duke University): The ImmPort Submission Process. A View From Biology Slides
Masci: Which Standards Do We Need For Data Analysis Slides
10:30 Break
10:45 Herman Mitchell and Jeremy Wildire: NIAID Asthma Consortium Facilitated Data Explorer
11:00 Discussion leader: Barry Smith
- Brainstorming on
- -- existing data management strategies and software tools to enhance data submission
- -- how to make your data discoverable and useable by external researchers
12:00 Lunch
13:00 Jeff Wiser (ImmPort / Northrop Grumman): Training session on submitting data to immPort
- -- the need to grow ImmPort's clinical submission area
14:30 Break
15:00 John Lim and Karen Kesler (Rho): The ImmPort Submission Process: Two Views from Rho
15:30 Jeff Abolafia (Rho): CDISC, C-DASH, SDTM, ADM
16:00 Discussion leader: Jeff Wiser
- Brainstorming on identifying pain points in submission and on strategies for improvement
Evening: Dinner
Day 2: Thursday, October 9
8:00 Breakfast
8:30 Lindsay Cowell: Immunology Ontologies Slides
9:45 Barry Smith: Introduction to Allergy Ontology Slides
10:45 Break
11:00 Who will be the users of ImmPort? / Next steps
12:00 Close
External participants
- Lindsay Cowell is a computational immunologist at UT Southwestern
- Anna Maria Masci is in charge of submission of data to ImmPort for the Multiscale System Immunology project
- Barry Smith is ImmPort ontology lead.
- Ravi Shankar is a researcher in the Atul Butte Lab at Stanford working on clinical trial ontology
- Jeff Wiser manages the ImmPort project at Northrop Grumman.
