Third CTS Ontology Workshop: Difference between revisions
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:9:15 Participant Introductions | :9:15 Participant Introductions | ||
:9:30 Keynote Address | :9:30 Keynote Address: [http://www.stanford.edu/~rubin/ '''Daniel Rubin] (Stanford University): Imaging Big Data''' | ||
::Driving use cases for imaging in the era of Big Data | ::Driving use cases for imaging in the era of Big Data | ||
::The central role of imaging ontology | ::The central role of imaging ontology | ||
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:13:30 - 14:30 Michael Becich: An Overview of Standards and Initiatives in Digital Pathology | :13:30 - 14:30 '''[http://www.dbmi.pitt.edu/person/michael-j-becich-md-phd Michael J. Becich]: An Overview of Standards and Initiatives in Digital Pathology''' | ||
:14:30 - 17:00 Identifying successful ontology-based initiatives in Digital Pathology and Imaging Research | :14:30 - 17:00 Identifying successful ontology-based initiatives in Digital Pathology and Imaging Research | ||
Revision as of 19:52, 11 December 2013
Ontology and Imaging Informatics
- Tutorial: June 23, 2014
- Workshop: June 24-25, 2014
- Goals: The goal of this meeting is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond. Examples of the types of subtopics to be addressed include:
- LIMS interoperability
- Immunohistochemistry Imaging
- Standards for biomedical video data
- The Open Microscopy Environment (OME)
- The Radiology Gamuts Ontology
- Aperio ePathology
- Ontology for Biomedical Investigations (OBI)
- Further information: Barry Smith
Draft Schedule: Tutorial
Monday, June 23
Tutorial
10:00 Registration
10:30 Ulysses Balis (Michigan): Introduction to Imaging Informatics: The Problem of Image Data Interoperability
12:30 Lunch
13:30 Barry Smith (Buffalo): Introduction to Ontology for Imaging Informatics
15:00 Break
15:30 William Hogan (Arkansas): Ontology in the CTSA Consortium
Draft Schedule: Workshop
Tuesday, June 24
- 8:30 Breakfast and Registration
- 9:15 Participant Introductions
- 9:30 Keynote Address: Daniel Rubin (Stanford University): Imaging Big Data
- Driving use cases for imaging in the era of Big Data
- The central role of imaging ontology
- Example projects using ontologies
- 10:30 Break
- 11:00 - 12:30 Digital Pathology across the CTSA Consortium: Identifying what there is
- 12:30 - 13:30 Lunch
- 13:30 - 14:30 Michael J. Becich: An Overview of Standards and Initiatives in Digital Pathology
- 14:30 - 17:00 Identifying successful ontology-based initiatives in Digital Pathology and Imaging Research
Wednesday, June 25
- 8:30 Breakfast
- 9:00 Digital Pathology: Practical sessions devoted to creating a strategy to promote interoperability of digital pathology data and systems
- 12:00 Lunch
- 13:00 Group Meetings
- Hackathon: Building an Ontology for Digital Pathology
- CTS Ontology Affinity Group
- Other breakout sessions may be organized according to demand
16:00 Close
Sponsors
- Department of Pathology and Anatomy, School of Medicine and Biomedical Sciences, University at Buffalo
Organizing Committee
- Barry Smith (Buffalo)
- William Hogan (Arkansas)
- John Tomaszewski (Buffalo)
