Third CTS Ontology Workshop: Difference between revisions
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:10:30 Break | :10:30 Break | ||
:11:00 Digital Pathology | :11:00 '''[http://www.dbmi.pitt.edu/person/michael-j-becich-md-phd Michael J. Becich]: An Overview of Standards and Initiatives in Digital Pathology''' | ||
:12: | :12:00 Lunch | ||
:13: | :13:00 '''[http://www.mcw.edu/radiology/faculty/CharlesKahn.htm Charles Kahn]: Radiology Gamuts Ontology: Differential Diagnosis in Radiology''' | ||
:14: | :14:00 '''[http://medicine.osu.edu/bmi/people/metin_gurcan/pages/index.aspx Metin N. Gurcan], [http://engineering.case.edu/centers/ccipd/ Anant Madabhushi] and [http://medicine.buffalo.edu/faculty/profile.html?ubit=johntoma John Tomaszewski]: Histopathological Image Analysis (HIMA) and Ontology''' | ||
:15: | :15:00 Break | ||
: | :15:30 TBA | ||
<u>Wednesday, June 25</u> | <u>Wednesday, June 25</u> | ||
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::Hackathon: Building an Ontology for Digital Pathology | ::Hackathon: Building an Ontology for Digital Pathology | ||
::CTS Ontology Affinity Group | ::CTS Ontology Affinity Group: Digital Pathology across the CTSA Consortium: Identifying What There Is and Identifying Opportunities for Collaboration | ||
:Other breakout sessions will be organized according to demand | :Other breakout sessions will be organized according to demand | ||
Revision as of 21:15, 22 January 2014
Ontology and Imaging Informatics
- Tutorial: June 23, 2014
- Workshop: June 24-25, 2014
- Goals: The goal of this meeting is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond. Examples of the types of subtopics to be addressed include:
- LIMS interoperability
- Immunohistochemistry Imaging
- Standards for biomedical video data
- The Open Microscopy Environment (OME)
- The Radiology Gamuts Ontology
- Aperio ePathology
- Ontology for Biomedical Investigations (OBI)
- Space for this meeting is limited and intending participants are encouraged to write to Barry Smith as soon as possible.
Draft Schedule: Tutorial
Monday, June 23
Tutorial
10:00 Registration
10:30 Ulysses Balis (Michigan): Introduction to Imaging Informatics: The Problem of Image Data Interoperability
12:30 Lunch
13:30 Barry Smith (Buffalo): Introduction to Ontology for Imaging Informatics
15:00 Break
15:30 William Hogan (Arkansas): Ontology in the CTSA Consortium
Draft Schedule: Workshop
Tuesday, June 24
- 8:30 Breakfast and Registration
- 9:15 Participant Introductions
- 9:30 Keynote Address: Daniel Rubin (Stanford University): Imaging Big Data
- Driving use cases for imaging in the era of Big Data
- The central role of imaging ontology
- Example projects using ontologies
- 10:30 Break
- 11:00 Michael J. Becich: An Overview of Standards and Initiatives in Digital Pathology
- 12:00 Lunch
- 13:00 Charles Kahn: Radiology Gamuts Ontology: Differential Diagnosis in Radiology
- 14:00 Metin N. Gurcan, Anant Madabhushi and John Tomaszewski: Histopathological Image Analysis (HIMA) and Ontology
- 15:00 Break
- 15:30 TBA
Wednesday, June 25
- 8:30 Breakfast
- 9:00 Digital Pathology: Practical sessions devoted to creating a strategy to promote interoperability of digital pathology data and systems
- 12:00 Lunch
- 13:00 Group Meetings
- Hackathon: Building an Ontology for Digital Pathology
- CTS Ontology Affinity Group: Digital Pathology across the CTSA Consortium: Identifying What There Is and Identifying Opportunities for Collaboration
- Other breakout sessions will be organized according to demand
16:00 Close
Sponsors
- Department of Pathology and Anatomy, School of Medicine and Biomedical Sciences, University at Buffalo
Organizing Committee
- Barry Smith (Buffalo)
- William Hogan (Arkansas)
- John Tomaszewski (Buffalo)
Initial List of Participants
Ulysses J. Balis (Ann Arbor)
Michael Becich (Pittsburgh)
Michael Dwyer (Buffalo)
Metin Gurcan (Ohio)
William Hogan (Arkansas)
Charles E. Kahn (Milwaukee)
Anant Madabhushi (Case)
Anna Maria Masci (Duke)
Daniel Rubin (Stanford)
Barry Smith (Buffalo)
Jose Luis Tapia (Buffalo)
John Tomaszewski (Buffalo)
