Basic Formal Ontology 2.0: Difference between revisions

From NCOR Wiki
Jump to navigationJump to search
mNo edit summary
 
(125 intermediate revisions by 2 users not shown)
Line 1: Line 1:
Saturday and Sunday, August 18-19, 2012.
== BFO OWL 2.0 ==
For BFO 2020 (= ISO standard) see [http://ncorwiki.buffalo.edu/index.php/BFO_2020 here]


'''VENUE:'''
Release information on [https://github.com/bfo-ontology/BFO/wiki BFO github site]


Room14A, Basement, [http://www.buffalo.edu/buildings/building?id=BALDY Baldy Hall], University at Buffalo [http://www.buffalo.edu/home/visiting-ub/north-campus-directions.html North Campus].
== VIDEO INTRODUCTION TO BFO 2.0 (2015) ==


'''DESCRIPTION:'''
[https://www.youtube.com/watch?v=iTNQYyh88-Y Part One]


Basic Formal Ontology is currently being used by over 100 ontology-based research projects in biomedical informatics and increasingly in other fields. The course will provide an introduction to the content and use of BFO in ontology development.  
[https://www.youtube.com/watch?v=IMCBON2me3Y Part Two]


'''SCHEDULE:'''
==BACKGROUND INFORMATION==


<u>Saturday, August 18: 9am-5pm</u>
'''[http://www.ifomis.uni-saarland.de/bfo/ BFO Website]'''
:*The main idea of BFO
:*The development of BFO 2.0
:*The BFO architecture
:::Instances and universals
:::Continuants and occurrents
:::Dependence and independence
:::Generic dependence and information entities
:::Processes and process profiles


<u>Sunday, August 19: 9am-5pm</u>
For introductory reading see: Pierre Grenon and Barry Smith: "[http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf SNAP and SPAN: Towards Dynamic Spatial Ontology]", ''Spatial Cognition and Computation'', 4 (2004), 69-103.
:*Examples of uses of BFO
:*Creating a domain ontology by extending BFO
:*BFO in First Order Logic
:*BFO in OWL
:::Uses of BFO in OWL
:*Concluding discussion


Background information concerning BFO is available [http://www.ifomis.uni-saarland.de/bfo/ here].  
For introductory reading on relations see: Barry Smith, Werner Ceusters, et al., “[http://genomebiology.com/2005/6/5/R46 Relations in Biomedical Ontologies]”, ''Genome Biology'' (2005), 6 (5), R46.


'''PARTICIPATION:'''  
For (optional) philosophical discussion of core BFO issues see: Barry Smith and Werner Ceusters, “[http://iospress.metapress.com/content/1551884412214u67/fulltext.pdf Ontological Realism as a Methodology for Coordinated Evolution of Scientific Ontologies]”, ''Applied Ontology'', 5 (2010), 139–188.


Participants should have some background in ontology (including either philosophical or applied ontology). No specific knowledge of BFO is presupposed. This tutorial allows both face-to-face and on-line participation. Participation may be for credit (with an official university transcript), or the tutorial may be audited (with a certificate of completion if needed). The course will take place on the weekend of August 18-19, 2012, with follow-up meetings as necessary for those taking the course for credit.  
This paper contains some material pertaining to process profiles: “[https://philpapers.org/rec/SMICPA-5 Classifying Processes: An Essay in Applied Ontology]”, ''Ratio'', 25:4 (2012), 463-488.


'''FOR CREDIT:'''
And the paper [http://ontology.buffalo.edu/smith/articles/Material_Entities.pdf here] contains material on the proposed BFO 2.0 classification of objects: “On Classifying Material Entities in Basic Formal Ontology”, in Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting, Tokyo: Keio University Press, 2012, 1-13.


Participation in this tutorial will yield 1 credit hour; up to 3 further credit hours for thie course can be received through completion of a project under the guidance of an assigned faculty member. Projects must be completed before November 30, 2012.
The current draft version of the BFO 2.0 Specification is available [https://github.com/BFO-ontology/BFO/raw/master/docs/bfo2-reference/BFO2-Reference.pdf here].  


::Course credits can be applied to the UB [http://philosophy.buffalo.edu/graduate/areas_of_study/ma_ontology/ Masters] and [http://philosophy.buffalo.edu/graduate/areas_of_study/phd_ontology/ PhD] Programs in Ontology. The University plans also an on-line Advanced Graduate Certificate Program in Ontology, to which credits for this course will also be applicable. Further details can be obtained from [mailto:phismith@buffalo.edu Barry Smith]
For further information please write to [mailto:phismith@buffalo.edu Barry Smith] or see [http://www.ifomis.uni-saarland.de/bfo/ here].


::Registration details for University at Buffalo (UB) students are [http://myub.buffalo.edu/course/public/scripts/crs_sched.cgi?switch=showclass&semester=summer&division=NON&dept=PHI&regnum=12518 here].
== DESCRIPTION ==


::Registration details for external (non-UB) participants are [http://ubthissummer.buffalo.edu/sessions/visiting-students.html here]; to find the course details go to ''Browse by Department'', then to ''Philosophy'', then scroll to the bottom of the page.
Basic Formal Ontology is currently being used by over 450 ontology-based research projects in biomedical informatics and increasingly in other fields. The course will provide an introduction to the content and use of BFO in ontology development. Attendees will acquire knowledge of the ontology and of its use as top-level ontology in multiple ontology development projects in a variety of fields. They will learn about the most recent developments in the ontology and acquire basic knowledge of the draft version 2.0.


'''AUDITING:'''
The current version of the draft Specification and User Guide for BFO 2.0 is available [http://purl.obolibrary.org/obo/bfo/Reference here].


Auditing, both on-line and face-to-face, is free to pre-registered participants. All those wishing to register as auditors should contact [mailto:phismith@buffalo.edu Barry Smith] as soon as possible.
The current version of the draft BFO 2.0 OWL file is available [http://purl.obolibrary.org/obo/bfo.owl here]. Please read the [http://purl.obolibrary.org/obo/bfo/2012-07-20/ReleaseNotes release notes]


Participation in the [http://ncorwiki.buffalo.edu/index.php/Introduction_to_Prot%C3%A9g%C3%A9 Introduction to Protégé] course is encouraged.
These links, and also further information concerning the draft BFO 2.0 release can be found at the BFO page here: https://github.com/BFO-ontology/BFO
 
[http://ncorwiki.buffalo.edu/index.php/WORKSHOP,_Buffalo,_August_18-19,_2012#WORKSHOP.2C_Buffalo.2C_August_18-19.2C_2012 BFO Workshop 2012]

Latest revision as of 12:19, 16 November 2023

BFO OWL 2.0

For BFO 2020 (= ISO standard) see here

Release information on BFO github site

VIDEO INTRODUCTION TO BFO 2.0 (2015)

Part One

Part Two

BACKGROUND INFORMATION

BFO Website

For introductory reading see: Pierre Grenon and Barry Smith: "SNAP and SPAN: Towards Dynamic Spatial Ontology", Spatial Cognition and Computation, 4 (2004), 69-103.

For introductory reading on relations see: Barry Smith, Werner Ceusters, et al., “Relations in Biomedical Ontologies”, Genome Biology (2005), 6 (5), R46.

For (optional) philosophical discussion of core BFO issues see: Barry Smith and Werner Ceusters, “Ontological Realism as a Methodology for Coordinated Evolution of Scientific Ontologies”, Applied Ontology, 5 (2010), 139–188.

This paper contains some material pertaining to process profiles: “Classifying Processes: An Essay in Applied Ontology”, Ratio, 25:4 (2012), 463-488.

And the paper here contains material on the proposed BFO 2.0 classification of objects: “On Classifying Material Entities in Basic Formal Ontology”, in Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting, Tokyo: Keio University Press, 2012, 1-13.

The current draft version of the BFO 2.0 Specification is available here.

For further information please write to Barry Smith or see here.

DESCRIPTION

Basic Formal Ontology is currently being used by over 450 ontology-based research projects in biomedical informatics and increasingly in other fields. The course will provide an introduction to the content and use of BFO in ontology development. Attendees will acquire knowledge of the ontology and of its use as top-level ontology in multiple ontology development projects in a variety of fields. They will learn about the most recent developments in the ontology and acquire basic knowledge of the draft version 2.0.

The current version of the draft Specification and User Guide for BFO 2.0 is available here.

The current version of the draft BFO 2.0 OWL file is available here. Please read the release notes

These links, and also further information concerning the draft BFO 2.0 release can be found at the BFO page here: https://github.com/BFO-ontology/BFO

BFO Workshop 2012

Retrieved from "https://ncorwiki.buffalo.edu/index.php?title=Basic_Formal_Ontology_2.0&oldid=74015"