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| == Ontology and Imaging Informatics ==
| | See: [[Ontology and Imaging Informatics]] |
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| *Venue: [http://www.ramadahotelamherst.com/ Ramada Inn Hotel and Conference Center, Amherst, NY 14068]
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| *Dates
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| :*Tutorial: June 23, 2014
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| :*Workshop: June 24-25, 2014
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| *Goals: The goal of this workshop is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond.
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| The workshop will be preceded by a tutorial (Day 0) providing an introduction to biomedical imaging ontology.
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| Day 1 of the workshop will consist in an overview of major contributions to biomedical imaging in radiology and digital pathology with a view towards coordination and exchange of ideas.
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| Day 2 will allow consist of a number of breakout groups addressing specific goals of their respective communities. One such group will focus on a draft Digital Pathology Image Ontology, which will be distributed to interested participants in advance. Another group will address the coordination of research in digital imaging across the CTSA consortium.
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| The meeting will conclude with reports from the breakout groups and with a session devoted to future plans.
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| Examples of the types of subtopics to be addressed include:
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| ::LIMS interoperability
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| ::Immunohistochemistry Imaging
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| ::Standards for biomedical video data
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| ::[http://www.openmicroscopy.org/ The Open Microscopy Environment] (OME)
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| ::[[Gamuts | The Radiology Gamuts Ontology]]
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| ::[http://www.aperio.com/healthcare/eslide Aperio ePathology]
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| ::[http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] (OBI)
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| *Space for this meeting is limited and intending participants are encouraged to write to [mailto:phismith@buffalo.edu Barry Smith] as soon as possible.
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| == '''Draft Schedule: Tutorial''' ==
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| <u>Monday, June 23</u>
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| '''Tutorial'''
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| 10:00 Registration
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| 10:30 [http://www.ccmb.med.umich.edu/node/192 Ulysses Balis] (Michigan): Introduction to Imaging Informatics: The Problem of Image Data Interoperability
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| 12:30 Lunch
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| 13:30 [http://ontology.buffalo.edu/smith Barry Smith] (Buffalo): Introduction to Ontology for Imaging Informatics
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| 15:00 Break
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| 15:30 [http://dbmi.uams.edu/faculty/william-r-hogan-m-d/ William Hogan] (Arkansas): Ontology in the CTSA Consortium
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| == '''Draft Schedule: Workshop''' ==
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| <u>Tuesday, June 24</u>
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| :8:30 Breakfast and Registration
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| :9:15 Participant Introductions
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| :9:30 Keynote Address: [http://www.stanford.edu/~rubin/ '''Daniel Rubin] (Stanford University): Imaging Big Data'''
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| ::Driving use cases for imaging in the era of Big Data
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| ::The central role of imaging ontology
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| ::Example projects using ontologies
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| :10:30 Break
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| :11:00 '''[http://www.dbmi.pitt.edu/person/michael-j-becich-md-phd Michael J. Becich]: An Overview of Standards and Initiatives in Digital Pathology'''
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| :12:00 Lunch
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| :13:00 '''[http://www.mcw.edu/radiology/faculty/CharlesKahn.htm Charles Kahn]: Radiology Gamuts Ontology: Differential Diagnosis in Radiology'''
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| :14:00 '''[http://medicine.osu.edu/bmi/people/metin_gurcan/pages/index.aspx Metin N. Gurcan], [http://engineering.case.edu/centers/ccipd/ Anant Madabhushi] and [http://medicine.buffalo.edu/faculty/profile.html?ubit=johntoma John Tomaszewski]: Histopathological Image Analysis (HIMA) and Ontology'''
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| :15:00 Break
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| :15:30 TBA
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| <u>Wednesday, June 25</u>
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| :8:30 Breakfast
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| :9:00 Digital Pathology: Practical sessions devoted to creating a strategy to promote interoperability of digital pathology data and systems
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| :12:00 Lunch
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| :13:00 Group Meetings
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| ::Hackathon: Building an Ontology for Digital Pathology
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| ::CTS Ontology Affinity Group: Digital Pathology across the CTSA Consortium: Identifying What There Is and Identifying Opportunities for Collaboration
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| :Other breakout sessions will be organized according to demand
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| 16:00 Close
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| ----
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| == Sponsors ==
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| *[http://www.smbs.buffalo.edu/path/index.htm Department of Pathology and Anatomy], School of Medicine and Biomedical Sciences, University at Buffalo
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| *[http://bioontologies.org National Center for Biomedical Ontology]
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| *[https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group].
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| ----
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| == Organizing Committee ==
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| :Barry Smith (Buffalo)
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| :William Hogan (Arkansas)
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| :John Tomaszewski (Buffalo)
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| == Initial List of Participants ==
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| Ulysses J. Balis (Ann Arbor)
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| Michael Becich (Pittsburgh)
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| Michael Dwyer (Buffalo)
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| Metin Gurcan (Ohio)
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| William Hogan (Arkansas)
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| Charles E. Kahn (Milwaukee)
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| Anant Madabhushi (Case)
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| Anna Maria Masci (Duke)
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| Daniel Rubin (Stanford)
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| Barry Smith (Buffalo)
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| Jose Luis Tapia (Buffalo)
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| John Tomaszewski (Buffalo)
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