Third CTS Ontology Workshop: Difference between revisions
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::Standards for biomedical video data | ::Standards for biomedical video data | ||
::[http://www.openmicroscopy.org/ The Open Microscopy Environment] (OME) | ::[http://www.openmicroscopy.org/ The Open Microscopy Environment] (OME) | ||
::[[Gamuts | The Radiology Gamuts Ontology]] | |||
::The http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] as a starting point for an ontology of image-related processes | ::The http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] as a starting point for an ontology of image-related processes | ||
*Further information: [mailto:phismith@buffalo.edu Barry Smith] | *Further information: [mailto:phismith@buffalo.edu Barry Smith] | ||
Revision as of 14:15, 11 November 2013
Special Focus:
Ontology and Imaging Informatics
- Tutorial: June 23, 2014
- Workshop: June 24-25, 2014
- Goals: The goal of this meeting is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond. Examples of the types of subtopics to be addressed include:
- LIMS interoperability
- Standards for biomedical video data
- The Open Microscopy Environment (OME)
- The Radiology Gamuts Ontology
- The http://obi-ontology.org/page/Main_Page Ontology for Biomedical Investigations] as a starting point for an ontology of image-related processes
- Further information: Barry Smith
Draft Schedule: Tutorial
Monday, June 23</u\>
Tutorial
10:00 Registration
10:30 Ulysses Balis (Michigan) Introduction to Imaging Informatics: The Problem of Image Data Interoperability
12:30 Lunch
13:30 Barry Smith (Buffalo): Introduction to Ontology for Imaging Informatics
15:00 Break
15:30 William Hogan (Arkansas): Ontology in the CTSA Consortium
Draft Schedule: Workshop
Tuesday, June 24
- 8:30 Breakfast and Registration
- 9:15 Participant Introductions
- 9:30 Keynote Address by Daniel Rubin (Stanford University): Imaging Big Data
- Driving use cases for imaging in the era of Big Data
- The central role of imaging ontology
- Example projects using ontologies
- 10:30 Break
- 11:00 - 12:30 Digital Pathology across the CTSA Consortium: Identifying what there is
- 12:30 - 13:30 Lunch
- 13:30 - 17:00 Identifying ontology-based initiatives in Digital Pathology
Wednesday, June 25
- 8:30 Breakfast
- 9:00 Digital Pathology: Practical sessions devoted to creating a strategy to promote interoperability of digital pathology data and systems
- 12:00 Lunch
- 13:00 Group Meetings
- Hackathon: Building an Ontology for Digital Pathology
- CTS Ontology Affinity Group
- Other breakout sessions may be organized according to demand
16:00 Close
Sponsors
- Department of Pathology and Anatomy, School of Medicine and Biomedical Sciences, University at Buffalo
- IKFC Clinical and Translational Science Ontology Affinity Group Clinical and Translational Science Ontology Affinity Group. The CTS Ontology Affinity Group has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research.
