Immunology Ontologies: Difference between revisions
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== Portals == | == Portals == | ||
[https://immport.niaid.nih.gov/immportWeb/home/home.do?loginType=full ImmPort] | [https://immport.niaid.nih.gov/immportWeb/home/home.do?loginType=full ImmPort: Bioinformatics for the Future of Immunology] | ||
[http://www.immuneprofiling.org/hipc/page/showPage?pg=subcommittees-bioinf HIPC] | [http://www.immuneprofiling.org/hipc/page/showPage?pg=subcommittees-bioinf HIPC: Human Immunology Project Consortium] | ||
[http://tsb.mssm.edu/primeportal/ PRIME] | [http://tsb.mssm.edu/primeportal/ Program for Research on Immune Modeling and Experimentation PRIME] | ||
[http://www.iedb.org/ Immune Epitope Database and Analysis Resource] | |||
==Background Reading== | ==Background Reading== | ||
Revision as of 00:10, 20 April 2013
Events
Lecture and practical session on Immunology Ontology as part of Summer School for Quantitative Systems Immunology, Boston, MA, June 11, 2013
Ontologies
The Protein Ontology (PRO)
The Gene Ontology (GO)
The Cell Ontology (CL)
The Immune Epitope Ontology (ONTIE)
The Infectious Disease Ontology (IDO)
Ontology for Biomedical Investigations (OBI)
Ontology Consortia
OBO (Open Biological and Biomedical Ontologies) Foundry
Portals
ImmPort: Bioinformatics for the Future of Immunology
HIPC: Human Immunology Project Consortium
Program for Research on Immune Modeling and Experimentation PRIME
Immune Epitope Database and Analysis Resource
Background Reading
Diehl AD, Augustine AD, Blake JA, Cowell LG, et al. Hematopoietic cell types: prototype for a revised cell ontology. J Biomed Inform. 2011; 44(1).
Meehan TF, Masci AM, Abdulla A, Cowell LG, et al. Logical development of the cell ontology. BMC Bioinformatics. 2011; 12.
Aravind Subramanian, et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles, PNAS, 102 (43), 15545–15550.
