Protein Ontology Workshop
Venue: Georgetown University
Date: June (17)-18-19, 2014. The meeting will start with dinner on Tuesday, June 17 and conclude at 4pm on June 19.
Goals
The goals of this meeting are:
- 1. To contribute to the ontological understanding of phenotype and disease across organisms.
- 2. To advance the treatment of protein-related clinical and translational data from the perspective of consistency, discoverability and support for diagnosis.
- 3. To advance coordination between the Protein Ontology and other protein-related resources, including the UniProtKB and the Protein Data Bank
Themes:
- Neurological disease, immunology, cancer
- Protein-based disease representation
- PRO and UniProt
Persons interested in participating should contact Barry Smith as soon as possible.
Draft Schedule
Wednesday, June 18, 2014
8:00 Continental Breakfast
9:00 Cathy Wu (Delaware/Georgetown): Current Status and Future Goals of the Protein Ontology
10:30 Break
10:45 Peter d'Eustachio (NYU): PRO, Reactome and Disease Pathways
12:00 Lunch
13:00 Evan Bolton (NCBI) PubChemRDF: Towards a Semantic Description of PubChem
13:45 Lynn Schriml (Baltimore): Collaboration of PRO and PubChem with the Disease Ontology
14:30 Break
15:45 John Westbrook (PDB): PRO Represention of Proteins Observed in 3D Experimental Structure Data
16:30 Alexander Diehl (Buffalo): PRO and the NIF / ImmPort Antibody Registries
17:30 Close
18:00 Working Dinner
Thursday, June 19th, 2014
8:00 Continental breakfast
9:00 Ioannis Xenarios (SIB): Ontologies in UniProtKB/Swiss-Prot
9:45 Claire Donovan (EBI): Ontologies at the EBI
10:30 Break
10:45 Barry Smith (Buffalo): Ontologies, Databases, Knowledgebases: How Should They Interoperate?
12:30 Lunch
13:30 Alan Ruttenberg (Buffalo): UniProt Accessions - Issues of Tracking and Stability
14:15 TBD
16:00 Close
Participants
- Cecilia Arighi (Georgetown)
- Carol Bean (NCBO / Stanford)
- Judith Blake (JAX)
- Evan Bolton (NCBI / NIH)
- Jonathan Bona (Buffalo)
- Karen Christie (JAX)
- Peter d'Eustachio (NYU / Reactome)
- Alex Diehl (Buffalo)
- Harold Drabkin (JAX)
- Gang Fu (NCBI / NIH)
- Darren Natale (Georgetown)
- Claire O'Donovan (EBI / UniProt)
- Alan Ruttenberg (Buffalo)
- Sirarat Sarntivijai (FDA)
- Lynn Schriml (Baltimore)
- Barry Smith (Buffalo)
- John Westbrook (PDB / Rutgers)
- Cathy Wu (Delaware)
- Ioannis Xenarios (Geneva / UniProt)
Please contact Barry Smith for further information.
