PRO Consortium Workshop 2017: Difference between revisions
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8:45 Cathy Wu (Delaware/Georgetown): [http://ncor.buffalo.edu/2014/PRO/Wu.pdf Current Status and Future Goals of the Protein Ontology] | 8:45 Cathy Wu (Delaware/Georgetown): [http://ncor.buffalo.edu/2014/PRO/Wu.pdf Current Status and Future Goals of the Protein Ontology] | ||
10:30 Break | 10:30 Break | ||
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12:15 Lunch | 12:15 Lunch | ||
<u>Chair: | <u>Chair: TBD</u>: '''Developing PRO's Scope for Annotating Disease''' | ||
13:00 | |||
15:20 Break | 15:20 Break | ||
15:40 | |||
15:40 | |||
17:20 Close | 17:20 Close | ||
18:00 Working Dinner: | 18:00 Working Dinner: Venue TBD | ||
=='''Schedule: Thursday, October 12, 2017'''== | =='''Schedule: Thursday, October 12, 2017'''== | ||
Revision as of 00:45, 18 May 2017
Date: October 11-12, 2017
Venue: Jackson Lab, Bar Habor, Maine
Goals and outcomes
The goals of this meeting are:
- 1. To contribute to the ontological understanding of phenotype and disease across organisms
- 2. To advance the treatment of protein-related clinical and translational data from the perspective of consistency, discoverability and support for diagnosis
- 3. To advance coordination between the Protein Ontology and other protein-related information resources
Desired outcomes are of two sorts:
- Relating to disease:
- We will seek greater clarity as to
- - how proteomic information in general and the PRO in particular can help us to understand the relationship between genotype and phenotype, for example in understanding disease etiology
- - which relations we should use in linking the protein entities represented in the PRO to disease entities
- - which are the important entities on the protein side that need to be linked
- Relating to PRO's interactions with external resources:
- UniProt: Draft of policies/recommendations regarding accession/site tracking for UniProt and PRO
- IntAct: Identify points of agreement and discrepancy in curation pipelines and resolve as appropriate. Reach agreements for example on reciprocal links and accession issues
The future development of PRO and of PRO’s role in the Alliance of Genome Resources
Use of Noctua for GO annotation, use of PRO in Noctua
Benefits and limitations of PRO
PRO and PTM knowledge networks
Developing PROs scope for annotating diseases
Schedule: Tuesday, October, 10, 2017
19:00 Informal reception for early arrivals in conference hotel
Schedule: Wednesday, October, 11, 2017
Chair: Barry Smith
8:45 Cathy Wu (Delaware/Georgetown): Current Status and Future Goals of the Protein Ontology
10:30 Break
10:45 Olivier Bodenreider (NLM): Ontologies in the NLM
11:25 Sirarat Sarntivijai (FDA): Using the Protein Ontology: The View from the Outside
11:55 Carol Bean (Stanford / NCBO): The Future of the Bioportal
12:15 Lunch
Chair: TBD: Developing PRO's Scope for Annotating Disease
13:00
15:20 Break
15:40
17:20 Close
18:00 Working Dinner: Venue TBD
Schedule: Thursday, October 12, 2017
Venue: JAX
8:00 Continental breakfast
Chair: TBD GO, PRO and UniProt: How they should work together
9:00 Alex Bateman (EBI)
10:30 Break
10:45
12:30 Lunch
Chair: Cecilia Arrighi
13:30
14:30 Break
14:45
16:00 Close
Participants
- Cecilia Arighi (Delaware / PRO)
- Erich Baker (Baylor))
- Alex Bateman (EBI)
- Judith Blake (JAX)
- Elissa Chesler (JAX)
- ? Karen Christie (JAX)
- Alex Diehl (Buffalo)
- Harold Drabkin (JAX)
- ? Gang Fu (NCBI / NIH)
- ? John S. Garavelli (Delaware)
- ? Donna Maglott (NIH / NLM / NCBI)
- Darren Natale (Georgetown)
- ? Veerasamy “Ravi” Ravichandran (NIH / NIGMS)
- ? Karen Ross (Delaware)
- Alan Ruttenberg (Buffalo)
- Cynthia Smith (JAX)
- Barry Smith (Buffalo)
- Kimberley VanAuken (CalTech)
- Laurens Wilming (JAX)
- Cathy Wu (Delaware / PRO)
Please contact Barry Smith for further information.
