Protein Ontology Workshop

Venue: Georgetown University

Date: June (17)-18-19, 2014. The meeting will start with dinner on Tuesday, June 17 and conclude at 4pm on June 19.

---

Goals

The goals of this meeting are:

• 1. To contribute to the ontological understanding of phenotype and disease across organisms.
• 2. To advance the treatment of protein-related clinical and translational data from the perspective of consistency, discoverability and support for diagnosis.

Themes:

Neurological disease, immunology, cancer

Protein-based Disease Representation

Clinical Research Proteomics

PRO and UniProt

PTN Kinase Inhibitors (?)

Histones

Space is limited and intending participants should contact Barry Smith as soon as possible.

Schedule

Wednesday, June 18, 2014

8:00 Continental Breakfast

9:00 Cathy Wu (Delaware/Georgetown): ​Current Status and Future Goals of the Protein Ontology

10:30 Break

10:45 Evan Bolton (NCBI) PubChemRDF: Towards a Semantic Description of PubChem

12:00 Lunch

13:00 Lynn Schriml (Baltimore): "Collaboration of PRO and PubChem with the Disease Ontology"

14:30 Break

15:00 John Westbrook (PDB): PRO Represention of Proteins Bbserved in 3D Experimental Structure Data

17:30 Close

18:00 Working Dinner

Thursday, June 19th, 2014

8:00 Continental breakfast

9:00 PRO and UniProt

10:30 Break

10:45

12:30 Lunch

13:30

16:00 Close

---

Participants

Cecilia Arighi (Georgetown)

Carol Bean (NCBO / Stanford)

Judith Blake (JAX)

Evan Bolton (NCBI)

Jonathan Bona (Buffalo)

Karen Christie (JAX)

Peter d'Eustachio (NYU / Reactome)

Alex Diehl (Buffalo)

Harold Drabkin (JAX)

Gang Fu (NBCI)

Darren Natale (Georgetown)

Claire O'Donovan (EBI / UniProt)

Alan Ruttenberg (Buffalo)

Barry Smith (Buffalo)

John Westbrook (PDB / Rutgers)

Cathy Wu (Delaware)

Ioannis Xenarios (Geneva / UniProt)

Please contact Barry Smith for further information.

Sponsors

The Protein Ontology Consortium

Co-Sponsors

National Center for Biomedical Ontology

National Center for Ontological Research