Protein Ontology Workshop
Venue: Conference Room #1300, Harris Building, Georgetown University, 3300 Whitehaven Street NW, Washington DC 20007.
Date: June (17)-18-19, 2014. The meeting will start with dinner on Tuesday, June 17 and conclude at 4pm on June 19.
Goals
The goals of this meeting are:
- 1. To contribute to the ontological understanding of phenotype and disease across organisms.
- 2. To advance the treatment of protein-related clinical and translational data from the perspective of consistency, discoverability and support for diagnosis.
- 3. To advance coordination between the Protein Ontology and other protein-related resources, including the UniProtKB and the Protein Data Bank
Themes:
- Neurological disease, immunology, cancer
- Protein-based disease/phenotype representation
- PRO and UniProt
Persons interested in participating should contact Barry Smith as soon as possible.
Schedule: Wednesday, June 18, 2014
8:00 Continental Breakfast
9:00 Cathy Wu (Delaware/Georgetown): Current Status and Future Goals of the Protein Ontology
10:00 Peter d'Eustachio (NYU): PRO, Reactome and Disease Pathways
10:45 Break
11:00 Sirarat Sarntivijai (FDA): Using the Protein Ontology: The View from the Outside
12:00 Lunch
13:00 Sandra Orchard (EBI): PRO and IntAct
14:00 Evan Bolton (NCBI): PubChemRDF: Towards a Semantic Description of PubChem
14:40 Lynn Schriml (Baltimore): Collaboration of PRO and PubChem with the Disease Ontology
15:20 Break
15:40 Veerasamy “Ravi” Ravichandran (NIGMS): NIGMS and the Protein Ontology
16:00 John Westbrook (PDB): PRO Represention of Proteins Observed in 3D Experimental Structure Data
16:40 Alexander Diehl (Buffalo): PRO and the NIF / ImmPort Antibody Registries
17:25 Alexander Cox (Buffalo): Neurofibrillary Tangles and Amyloid Plaques: The Treatment of Protein Aggregates in the Protein Ontology
17:30 Close
18:00 Working Dinner
Schedule: Thursday, June 19th, 2014
8:00 Continental breakfast
9:00 Donna Maglott (NIH): PRO and Medical Genetics resources at NCBI
9:45 Claire Donovan (EBI): Ontologies at the EBI
10:30 Break
10:45 Jonathan Bona and Alan Ruttenberg (Buffalo): UniProt Accessions - Issues of Tracking and Stability
11:30 TBD
12:30 Lunch
13:30 Judith Blake (Jackson Lab) and Barry Smith (Buffalo): Ontologies, Databases, Knowledgebases: How Should They Interoperate?
14:30 Break
14:45 Gilbert S. Omenn (Michigan): The Human Proteome Project
16:00 Close
Participants
- Cecilia Arighi (Georgetown)
- Carol Bean (NCBO / Stanford)
- Judith Blake (JAX)
- Olivier Bodenreider (NIH / NLM / LHC)
- Evan Bolton (NIH / NCBI)
- Jonathan Bona (Buffalo)
- Karen Christie (JAX)
- Alexander Cox (Buffalo)
- Peter d'Eustachio (NYU / Reactome)
- Alex Diehl (Buffalo)
- Harold Drabkin (JAX)
- Donna Duffield (NIH / NLM / NCBI)
- Gang Fu (NCBI / NIH)
- Donna Maglott (NIH / NLM / NCBI)
- John Mattison (Global Alliance for Genomics and Health)
- Darren Natale (Georgetown)
- Claire O'Donovan (EBI / UniProt)
- Gilbert S. Omenn (Michigan)
- Sandra Orchard (EBI / IntAct)
- Veerasamy “Ravi” Ravichandran (NIH / NIGMS)
- Karen Ross (Delaware)
- Alan Ruttenberg (Buffalo)
- Sirarat Sarntivijai (FDA)
- Selja Seppälä (Buffalo)
- Lynn Schriml (Baltimore)
- Barry Smith (Buffalo)
- John Westbrook (PDB / Rutgers)
- Cathy Wu (Delaware)
Please contact Barry Smith for further information.
