The Role of Ontology in Big Cancer Data: Difference between revisions

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*Ilya Goldberg (Image Informatics and Computational Biology Unit, National Institute on Aging)
*Ilya Goldberg (Image Informatics and Computational Biology Unit, National Institute on Aging)
*Warren Kibbe (National Cancer Institute / Disease Ontology)
*Warren Kibbe (National Cancer Institute / Disease Ontology)
*Raja Mazumder (Georgetown University / Protein Information Resource)
*Elvira Mitraka (University of Maryland, Baltimore)
*Mark Musen (Stanford / National Center for Biomedical Ontology and Center for Expanded Data Annotation and Retrieval)
*Mark Musen (Stanford / National Center for Biomedical Ontology and Center for Expanded Data Annotation and Retrieval)
*Darren Natale (Georgetown University / Protein Ontology Consortium)
*Darren Natale (Georgetown University / Protein Ontology Consortium)
*Lynn Schriml (Baltimore / Disease Ontology)
*Lynn Schriml (University of Maryland, Baltimore / Disease Ontology)
*Barry Smith (Buffalo / Open Biomedical Ontologies Foundry)
*Barry Smith (Buffalo / Open Biomedical Ontologies Foundry)
*John Tomaszewski (Buffalo)
*John Tomaszewski (Buffalo)

Revision as of 22:07, 13 November 2014

Date: May 12-13, 2015

Venue

  • Day 1 (10am-5pm) and Day 2 (9am-noon) will be in NCI's Shady Grove building (9609 Medical Center Dr, Rockville, MD, 20850), in Room 2W-32/34.
  • Day 2 Afternoon (1-3pm) will be a public session in the Natcher Conference Center, NIH Building 45, Bethesda, MD 20892

Goal of the meeting (to be expanded)

To explore the utility of ontologies for big data-based cancer research


Areas of interest

  • TCGA (e.g. How to expand TCGA to give an enhanced role to proteomics)
  • Ontology work (for example using the PRO) on actionable mutations
  • Applications to personalized medicine
  • IoM new disease taxonomy
  • Big Cancer Imaging Data
  • Clinical genomics

Sponsors

  • National Cancer Institute Center for Biomedical Informatics and Information Technology (CBIIT)
  • National Center for Biomedical Ontology (NCBO)
  • National Center for Ontological Research (NCOR)
  • Center for Expanded Data Annotation and Retrieval ([CEDAR)

Participants will include

  • Sherri de Coronado (National Cancer Institute)
  • Lindsay Cowell (UT Southwestern Medical Center)
  • Peter Elkin (Department of Biomedical Informatics, University at Buffalo)
  • Gilberto Fragoso (National Cancer Institute)
  • Ilya Goldberg (Image Informatics and Computational Biology Unit, National Institute on Aging)
  • Warren Kibbe (National Cancer Institute / Disease Ontology)
  • Raja Mazumder (Georgetown University / Protein Information Resource)
  • Elvira Mitraka (University of Maryland, Baltimore)
  • Mark Musen (Stanford / National Center for Biomedical Ontology and Center for Expanded Data Annotation and Retrieval)
  • Darren Natale (Georgetown University / Protein Ontology Consortium)
  • Lynn Schriml (University of Maryland, Baltimore / Disease Ontology)
  • Barry Smith (Buffalo / Open Biomedical Ontologies Foundry)
  • John Tomaszewski (Buffalo)
  • Cathy Wu (Delaware / Protein Ontology)
  • Wenjin J. Zheng (Center for Computational Biomedicine, University of Texas Health Science Center at Houston)