Third CTS Ontology Workshop: Difference between revisions

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:9:15 Participant Introductions
:9:15 Participant Introductions


:9:30 Keynote Address  
:9:30 Keynote Address: [http://www.stanford.edu/~rubin/ '''Daniel Rubin] (Stanford University): Imaging Big Data'''
*'''[http://www.stanford.edu/~rubin/ Daniel Rubin] (Stanford University): Imaging Big Data'''
::Driving use cases for imaging in the era of Big Data  
::Driving use cases for imaging in the era of Big Data  
::The central role of imaging ontology
::The central role of imaging ontology
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:12:30 -  13:30 Lunch
:12:30 -  13:30 Lunch


:13:30 - 14:30 Michael Becich: An Overview of Standards and Initiatives in Digital Pathology
:13:30 - 14:30 '''[http://www.dbmi.pitt.edu/person/michael-j-becich-md-phd Michael J. Becich]: An Overview of Standards and Initiatives in Digital Pathology'''


:14:30 - 17:00 Identifying successful ontology-based initiatives in Digital Pathology and Imaging Research
:14:30 - 17:00 Identifying successful ontology-based initiatives in Digital Pathology and Imaging Research

Revision as of 19:52, 11 December 2013

Ontology and Imaging Informatics

  • Tutorial: June 23, 2014
  • Workshop: June 24-25, 2014
  • Goals: The goal of this meeting is to identify ways to advance interoperability of biomedical imaging data across the CTSA Consortium and beyond. Examples of the types of subtopics to be addressed include:
LIMS interoperability
Immunohistochemistry Imaging
Standards for biomedical video data
The Open Microscopy Environment (OME)
The Radiology Gamuts Ontology
Aperio ePathology
Ontology for Biomedical Investigations (OBI)

Draft Schedule: Tutorial

Monday, June 23

Tutorial

10:00 Registration

10:30 Ulysses Balis (Michigan): Introduction to Imaging Informatics: The Problem of Image Data Interoperability

12:30 Lunch

13:30 Barry Smith (Buffalo): Introduction to Ontology for Imaging Informatics

15:00 Break

15:30 William Hogan (Arkansas): Ontology in the CTSA Consortium

Draft Schedule: Workshop

Tuesday, June 24

8:30 Breakfast and Registration
9:15 Participant Introductions
9:30 Keynote Address: Daniel Rubin (Stanford University): Imaging Big Data
Driving use cases for imaging in the era of Big Data
The central role of imaging ontology
Example projects using ontologies
10:30 Break
11:00 - 12:30 Digital Pathology across the CTSA Consortium: Identifying what there is
12:30 - 13:30 Lunch
13:30 - 14:30 Michael J. Becich: An Overview of Standards and Initiatives in Digital Pathology
14:30 - 17:00 Identifying successful ontology-based initiatives in Digital Pathology and Imaging Research

Wednesday, June 25

8:30 Breakfast
9:00 Digital Pathology: Practical sessions devoted to creating a strategy to promote interoperability of digital pathology data and systems
12:00 Lunch
13:00 Group Meetings
Hackathon: Building an Ontology for Digital Pathology
CTS Ontology Affinity Group
Other breakout sessions may be organized according to demand

16:00 Close


Sponsors


Organizing Committee

Barry Smith (Buffalo)
William Hogan (Arkansas)
John Tomaszewski (Buffalo)