View source for CTS Ontology Workshop 2015



<font size="+3">Ontology in Practice</font>


<font size="+2">The Fourth Clinical and Translational Science Ontology Workshop</font>

<font size="+2">September 23 - 25, Charleston, SC</font>


== '''Venue''' ==
<font size="+1">[http://www.francismarionhotel.com/ The Francis Marion Hotel]    '''•'''    [https://goo.gl/maps/zVpKx 387 King Street, Charleston, SC 29403] 

Starts: Wed 9/23/15 at 5pm with an optional reception. The workshop begins at 8am Thu 9/24/15.

Ends:   Fri 9/25/2015 3pm

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== '''Registration''' ==
<font size="+1">Registration is now open.

There is a $80 registration fee to support venue expenses and conference meals.

* Please register here: https://sctrweb2.musc.edu/CTS_Ontology_Registration.html

* Hotel group rate booking: https://bookings.ihotelier.com/bookings.jsp?groupID=1419298&hotelID=76320

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== '''Themes''' ==
# '''Adoption of Ontologies:''' Making ontologies work in real world use cases; Modifying or adopting existing ontologies; Addressing challenges in ontology technology
#Ontologies in practice for electronic health records (EHR)
# '''Methods in Ontologies for Real-World Applications:''' Mapping terminologies to ontologies; Automated classification/annotation/NLP.
# '''FHIR and Ontology'''

== Sub-themes ==
* Using ontologies for electronic data capture.
* Ontologies for biobanking and informed consents.
* Automated annotation, automated classification, clinical (or other) notes NLP, are some ontologies are better for NLP than others?
* In the medical space: ontology and HL7 Fast Healthcare Interoperability Resources (FHIR); Ontology and LOINC.
* Work on merging LOINC, SNOMED-CT and RxNorm; Leveraging Basic Formal Ontology (BFO).
* Ontology portals: connecting ontologies, using ontologies in non-redundant comprehensive manner, separating the wheat from the chaff, promoting ontology reuse.
* Bridging research resources and expertise using ontologies.
* Licensing issues in adoption of ontologies or terminologies.

== Draft Agenda ==
'''Day 0'''
* Evening reception
 
'''Day 1'''
8am-noon
# FHIR 
#* David Booth (FIHR): An introduction to FIHR
#* Barry Smith (Buffalo): How ontology for FIHR should look: 

1pm-3pm
# EHR and ontology
#* Peter Elkin (Buffalo): Ontologies driving EHRs
#* Bill Hogan & Amanda Hicks CCD doc & RDF, OWL formats

3:30-5:30  Biobanks 
#* Chris Stoeckert (Penn), Mathias & JieOBIB: 
#* Biobank terminology in practice: Helena (Duke)
#* Pathology/Imaging ontology (James Overton)

'''Day 2'''
# Consents & medical practice documents
#* ICO/VICO Asiyah
#* ICO: Frank and Marci (tentative)
#* D-ACTS: Mathias
# CTSA relevant issues
#* VIVO/eagle-i/ VIVO-ISF/ LOD (depends on attendance) (role in project evaluation)
#* Interoperability between OBO foundry and other ontologies and (e.g. SNOMED, LOINC, ICD-9/10, RxNorm) 
#* CDISC to RDF for clinical trials

== Other Topics Being Considered ==
* NLP approaches
* [http://wiki.hl7.org/index.php?title=FHIR_Ontology_Requirements FHIR]
* Merging ontologies
* Ontology portals
* Licensing issues
* Linked Open Data (LOD) & VIVO

== Participants will include ==
Sivaram Arabandi (OntoPro)

Mathias Brochhausen (University of Arkansas for Medical Sciences)

Peter Elkin (University at Buffalo)
 
William Hogan (University of Florida)

Ludger Jansen (University of Rostock)

Jihad Obeid (Medical University of South Carolina)

Barry Smith (University at Buffalo)

Dagobert Sorgel (University at Buffalo)

Asiyah Yu Lin (University of Michigan, Ann Arbor)

Amanda Hicks (University of Florida)

== Organizing Committee ==
Barry Smith (University at Buffalo)

William Hogan (University of Florida)

Jihad Obeid (Medical University of South Carolina)