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**Release process (Alan Ruttenberg, 10 min) **Temporalized relations (Alan Ruttenberg, 45 min)

Alan Ruttenberg (UB)

...in Jalali, Jafar Taghiyar Renani, Holden T. Maecker, J. Philip McCoy, Alan Ruttenberg, Richard H. Scheuermann and Ryan R. Brinkman. "FlowCL: ontology-based cell

:10:40am The Information Artifact Ontology (Alan Ruttenberg and Werner Ceusters) :Alan Ruttenberg <alanruttenberg@gmail.com>

:10:45 Alan Ruttenberg: An Introduction to OWL, the Web Ontology Language [http://ashby.csail.mit. :4:00 Mathias Brochhausen, Alan Ruttenberg, Barry Smith: Question and Answer Session

Alan Ruttenberg - https://bisc2012.atlassian.net/browse/OD-48 Alex Diehl, Alan Ruttenberg

*Alan Ruttenberg (Oral Diagnostic Sciences) will present the collaboration between the Prote

:Participants: Alan Ruttenberg and Darren Natale :11:15 Alan Ruttenberg: Discussion of how genes are referenced in OBO Foundry and in PRO: why do t

[http://icbo.buffalo.edu/presentations/Ruttenberg.pdf Ruttenberg] *Alan Ruttenberg: Introduction to the [http://obi-ontology.org/ Ontology for Biomedical Inve

:Defining 'protein aggregate' (Alan Ruttenberg)

*5:40 '''The Buffalo Semantic Web''': Alan Ruttenberg (Oral Diagnostic Sciences / UB Clinical and Translational Data Exchange)

Alan Ruttenberg (Buffalo)

:Alan Ruttenberg (UB)

=== Alan Ruttenberg === Alan Ruttenberg's research interest is in structuring and using biological and clinical kno

...He, Lindsay Cowell, Alexander D. Diehl, H. L. Mobley, Bjoern Peters, Alan Ruttenberg, Richard H. Scheuermann, Ryan R. Brinkman, Melanie Courtot, Chris Mungall,

=== Alan Ruttenberg === Alan Ruttenberg's research interest is in structuring and using biological and clinical kno

...r Biomedical Investigations (OBI) [http://ncor.buffalo.edu/2013/Immunology/Ruttenberg.pdf Slides] :11:00 Alan Ruttenberg, Barry Smith: A Debate on Strategies for Use of Ontologies in ImmPort

.../trunk/docs/BFO2-Tutorial-Implementation-Buffalo-2012-08-18-Ruttenberg.pdf Ruttenberg slides] *13:30 '''Introduction to OWL and to the Semantic Web''' (Alan Ruttenberg)

'''FACULTY''': Ron Rudnicki (CUBRC, Buffalo), Alan Ruttenberg (University at Buffalo), Barry Smith (University at Buffalo) '''[http://sciencecommons.org/about/whoweare/ruttenberg/ Alan Ruttenberg]''' is Director of the University at Buffalo Clinical and Translational Dat

11.15 Alan Ruttenberg and Jonathan Bona (Buffalo): [http://goo.gl/i1bMRo Issues surrounding coord :Alan Ruttenberg (Buffalo)

'''FACULTY''': Ron Rudnicki (CUBRC, Buffalo), Alan Ruttenberg (University at Buffalo), Barry Smith (University at Buffalo)

:9:35 [https://buffalo.box.com/v/Ruttenberg-PRO-Sites PRO sites] (Alan Ruttenberg) :Alan Ruttenberg (Buffalo)

:14:45 Alan Ruttenberg: '''[https://buffalo.box.com/s/ihcdleu3vzxm6x5vmx6eyrexhh7ysxbn OWL, Relati :Alan Ruttenberg (Buffalo)

[http://sciencecommons.org/about/whoweare/ruttenberg/ Alan Ruttenberg], Clinical and Translational Data Exchange, University at Buffalo, NY, USA

[https://www.researchgate.net/profile/Alan-Ruttenberg Alan Ruttenberg]<br />Director of Clinical and Translational Data Exchange<br />University <div style="text-align:right">The second keynote will be given by Alan Ruttenberg, </br>and will be titled <b><u>Time Matters</u></b></div>''

*1. Temporalized Relations (Ruttenberg) Alan Ruttenberg (Buffalo)

..., OWL, and the Semantic Web (45 min) 30 min talk, 15 min discussion (Alan Ruttenberg) ...to 14:30 - Basic Knowledge of Ontology (focusing on OWL) and Protégé (Alan Ruttenberg/Melanie Courtot)

'''Alan Ruttenberg''' Alan Ruttenberg’s research interest is in structuring and using biological and clinical k

'''Alan Ruttenberg''' Alan Ruttenberg’s research interest is in structuring and using biological and clinical k

:'''[https://www.linkedin.com/in/alanruttenberg Alan Ruttenberg]: Queryathon''' Alan Ruttenberg (University at Buffalo)

*[http://sciencecommons.org/about/whoweare/ruttenberg/ Alan Ruttenberg], UB Department of Oral Biology. ...ilbeck K, Ireland A, Mungall CJ; OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S. , [http://www.n

...12: '''Symposium on the Information Artifact Ontology: Part 1''' with Alan Ruttenberg (UB) The session is in two parts. First, an introduction by Alan Ruttenberg; second, a series of 15-second chess discussions of major issues, moderated

9:00am Alan Ruttenberg (Buffalo): '''Using OWL and BFO to safely decongest SNOMED''' [http://tinyu Alan Ruttenberg (School of Dental Medicine, University at Buffalo)

...or Biomedical Investigations. See [http://ncor.buffalo.edu/2013/Immunology/Ruttenberg.pdf Motivation for ontological representation of cell type identification Alan Ruttenberg

15:30 General Discussion of Ontologies and Flow Cytometry (Moderator: Alan Ruttenberg, Buffalo) :Alan Ruttenberg (University at Buffalo)

'''Alan Ruttenberg: The Basics of the Information Artifact Ontology'''

:Non-Coding RNA Ontology (Alan Ruttenberg)

...Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith

...Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith

'''Presentations by Alan Ruttenberg'''

Alan Ruttenberg (University at Buffalo Clinical and Translational Data Exchange)

Presenter: [http://sciencecommons.org/about/whoweare/ruttenberg/ Alan Ruttenberg] [http://ncor.buffalo.edu/2013/IE500/Ruttenberg-sources Supplementary sources]